QuakeLabeler is a Python package to create and manage your seismic training data, processes, and visualization in a single place — so you can focus on building the next big thing.

Related tags

Deep Learningpythondeep-learningseismologylabelerphase-pickingseismic-signalearthquake-datasets
Overview

QuakeLabeler

Quake Labeler was born from the need for seismologists and developers who are not AI specialists to easily, quickly, and independently build and visualize their training data set.

Introduction

QuakeLabeler is a Python package to customize, build and manage your seismic training data, processes, and visualization in a single place — so you can focus on building the next big thing. Current functionalities include retrieving waveforms from data centers, customizing seismic samples, auto-building datasets, preprocessing and augmenting for labels, and visualizing data distribution. The code helps all levels of AI developers and seismology researchers for querying and building their own earthquake datasets and can be used through an interactive command-line interface with little knowledge of Python.

Installation, Usage, documentation and scripts are described at https://maihao14.github.io/QuakeLabeler/

Author: Hao Mai(Developer and Maintainer) & Pascal Audet (Developer and Maintainer)

Installation

Conda environment

We recommend creating a custom conda environment where QuakeLabeler can be installed along with its dependencies.

  • Create a environment called ql and install pygmt:
conda create -n ql python=3.8 pygmt -c conda-forge
  • Activate the newly created environment:
conda activate ql

Installing from source

Download or clone the repository:

git clone https://github.com/maihao14/QuakeLabeler.git
cd QuakeLabeler
pip install .

If you work in development mode, use the -e argument as pip install -e .

Running the scripts

Create a work folder where you will run the scripts that accompany QuakeLabeler. For example:

mkdir ~/WorkFolder
cd WorkFolder

Run QuakeLabeler. Input QuakeLabeler to macOS terminal or Windows consoles:

QuakeLabeler

Or input quakelabeler also works:

quakelabeler

A QuakeLabeler welcome interface will be loading:

(ql) [email protected] QuakeLabeler % QuakeLabeler
Welcome to QuakeLabeler----Fast AI Earthquake Dataset Deployment Tool!
QuakeLabeler provides multiple modes for different levels of Seismic AI researchers

[Beginner] mode -- well prepared case studies;
[Advanced] mode -- produce earthquake samples based on Customized parameters.

Contributing

All constructive contributions are welcome, e.g. bug reports, discussions or suggestions for new features. You can either open an issue on GitHub or make a pull request with your proposed changes. Before making a pull request, check if there is a corresponding issue opened and reference it in the pull request. If there isn't one, it is recommended to open one with your rationale for the change. New functionality or significant changes to the code that alter its behavior should come with corresponding tests and documentation. If you are new to contributing, you can open a work-in-progress pull request and have it iteratively reviewed. Suggestions for improvements (speed, accuracy, etc.) are also welcome.

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Comments
  • QuakeLabeler ModuleNotFoundError

    QuakeLabeler ModuleNotFoundError

    I followed the installation instructions to install the fascinating QuakeLabeler package But I encountered an error as follows Traceback (most recent call last): File "/home/panxiong/anaconda3/envs/ql/bin/QuakeLabeler", line 5, in <module> from quakelabeler.scripts.QuakeLabeler import main ModuleNotFoundError: No module named 'quakelabeler.scripts' Please give me a solution, thanks.

    opened by PANXIONG-CN 2
  • Error loading GMT shared library

    Error loading GMT shared library

    Hello,

    I was trying to use the QuakeLabeler package on some data and when I tried to run it I got the following error:

    pygmt.exceptions.GMTCLibNotFoundError: Error loading GMT shared library at 'libgmt.so'. libgmt.so: cannot open shared object file: No such file or directory

    I saw that there were some responses to a similar question in the past, but they all involved using conda, which I don't use at it interferes with other libraries I use.

    So far I tried using:

    pip install pygmt

    as well as GMT:

    sudo apt-get install gmt gmt-dcw gmt-gshhg sudo apt-get install ghostscript Unfortunately, it did not work.

    Any suggestions would be appreciated

    opened by sbrent88 1
  • the problem of QuakeLabeler used in the Ubuntu

    the problem of QuakeLabeler used in the Ubuntu

    After I create the python environment needed by QuakeLabeler and install it in my Ubuntu computer, there was the problem, "AttributeError: 'numpy.int64' object has no attribute 'split'" when I execute QuakeLabeler (quakelabeler) in the terminal.

    “”“ Traceback (most recent call last): File "/home/xxx/anaconda3/envs/slc/bin/QuakeLabeler", line 33, in sys.exit(load_entry_point('QuakeLabeler', 'console_scripts', 'QuakeLabeler')()) File "/home/xxx/anaconda3/envs/slc/bin/QuakeLabeler", line 25, in importlib_load_entry_point return next(matches).load() File "/home/xxx/anaconda3/envs/slc/lib/python3.8/importlib/metadata.py", line 77, in load module = import_module(match.group('module')) File "/home/xxx/anaconda3/envs/slc/lib/python3.8/importlib/init.py", line 127, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1014, in _gcd_import File "", line 991, in _find_and_load File "", line 961, in _find_and_load_unlocked File "", line 219, in _call_with_frames_removed File "", line 1014, in _gcd_import File "", line 991, in _find_and_load File "", line 961, in _find_and_load_unlocked File "", line 219, in _call_with_frames_removed File "", line 1014, in _gcd_import File "", line 991, in _find_and_load File "", line 975, in _find_and_load_unlocked File "", line 671, in _load_unlocked File "", line 843, in exec_module File "", line 219, in _call_with_frames_removed File "/home/xxx/EQ_Detection/QuakeLabeler/quakelabeler/init.py", line 5, in from .classes import QuakeLabeler, Interactive, CustomSamples, QueryArrival, BuiltInCatalog, MergeMetadata, GlobalMaps File "/home/xxx/EQ_Detection/QuakeLabeler/quakelabeler/classes.py", line 35, in from obspy.core.utcdatetime import UTCDateTime File "/home/xxx/.local/lib/python3.8/site-packages/obspy/init.py", line 39, in from obspy.core.utcdatetime import UTCDateTime # NOQA File "/home/xxx/.local/lib/python3.8/site-packages/obspy/core/init.py", line 124, in from obspy.core.utcdatetime import UTCDateTime # NOQA File "/home/xxx/.local/lib/python3.8/site-packages/obspy/core/utcdatetime.py", line 27, in from obspy.core.util.deprecation_helpers import ObsPyDeprecationWarning File "/home/xxx/.local/lib/python3.8/site-packages/obspy/core/util/init.py", line 27, in from obspy.core.util.base import (ALL_MODULES, DEFAULT_MODULES, File "/home/xxx/.local/lib/python3.8/site-packages/obspy/core/util/base.py", line 36, in from obspy.core.util.misc import to_int_or_zero, buffered_load_entry_point File "/home/xxx/.local/lib/python3.8/site-packages/obspy/core/util/misc.py", line 214, in loadtxt(np.array([0]), ndmin=1) File "/home/xxx/anaconda3/envs/slc/lib/python3.8/site-packages/numpy/lib/npyio.py", line 1086, in loadtxt ncols = len(usecols or split_line(first_line)) File "/home/xxx/anaconda3/envs/slc/lib/python3.8/site-packages/numpy/lib/npyio.py", line 977, in split_line line = line.split(comment, 1)[0] AttributeError: 'numpy.int64' object has no attribute 'split' "”"

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