Readings for "A Unified View of Relational Deep Learning for Polypharmacy Side Effect, Combination Therapy, and Drug-Drug Interaction Prediction."

Last update: Jan 05, 2023

Overview

Polypharmacy - DDI - Synergy Survey

The Survey Paper

This repository accompanies our survey paper A Unified View of Relational Deep Learning for Polypharmacy Side Effect, Combination Therapy, and Drug-Drug Interaction Prediction.

If you find the survey or this repository useful in your research, please consider citing our paper:

@inproceedings{poliddicombisurvey,
       title = {{A Unified View of Relational Deep Learning for Polypharmacy Side Effect, Combination Therapy, and Drug-Drug Interaction Prediction}},
       author = {Benedek Rozemberczki and Stephen Bonner and Andriy Nikolov and Michaël Ughetto and Sebastian Nilsson and Eliseo Papa},
       year = {2021}
}

License

Apache 2.0

Comments

✨ Add "Relational Gaifman Models" + dataset
Add "Efficient Learning of Relational Gaifman Models using Probabilistic Logic" and dataset links

It might make sense to refer to one of the papers with respect to "high-level" or "low-level" models (see related publications here: https://srlearn.github.io/relational-datasets/dataset_descriptions/drug_interactions/). For now, this pull request adds links to the 2019 PLP paper under "Datasets."
opened by hayesall 0

Releases(v_00002)

v_00002(Jan 3, 2022)
What's Changed

✨ Add "Relational Gaifman Models" + dataset by @hayesall in https://github.com/AstraZeneca/awesome-drug-pair-scoring/pull/1

New Contributors

@hayesall made their first contribution in https://github.com/AstraZeneca/awesome-drug-pair-scoring/pull/1

Full Changelog: https://github.com/AstraZeneca/awesome-drug-pair-scoring/compare/v_00001...v_00002
Source code(tar.gz)
Source code(zip)
v_00001(Nov 29, 2021)
The repository covers deep learning papers that solve these tasks:

Drug - Drug Interaction Prediction

Polypharmacy Side Effect Prediction

Drug Combination Synergy Scoring

Source code(tar.gz)
Source code(zip)

Owner

AstraZeneca

Data and AI: Unlocking new science insights

GitHub Repository

CS583: Deep Learning

2.6k Dec 30, 2022

Files for a tutorial to train SegNet for road scenes using the CamVid dataset

SegNet and Bayesian SegNet Tutorial This repository contains all the files for you to complete the 'Getting Started with SegNet' and the 'Bayesian Seg

800 Dec 31, 2022

Virtual Dance Reality Stage is a feature that offers you to share a stage with another user virtually.

Virtual Dance Reality Stage is a feature that offers you to share a stage with another user virtually. It uses the concept of Image Background Removal using DeepLab Architecture (based on Semantic Se

5 Aug 24, 2022

Video-Captioning - A machine Learning project to generate captions for video frames indicating the relationship between the objects in the video

1 Jan 23, 2022

ICNet and PSPNet-50 in Tensorflow for real-time semantic segmentation

Real-Time Semantic Segmentation in TensorFlow Perform pixel-wise semantic segmentation on high-resolution images in real-time with Image Cascade Netwo

219 Nov 21, 2022

A PyTorch implementation of "SelfGNN: Self-supervised Graph Neural Networks without explicit negative sampling"

SelfGNN A PyTorch implementation of "SelfGNN: Self-supervised Graph Neural Networks without explicit negative sampling" paper, which will appear in Th

24 Jun 21, 2022

Code and Resources for the Transformer Encoder Reasoning Network (TERN)

Transformer Encoder Reasoning Network Code for the cross-modal visual-linguistic retrieval method from "Transformer Reasoning Network for Image-Text M

53 Dec 30, 2022

Deploy pytorch classification model using Flask and Streamlit

1 Nov 17, 2021

BigDetection: A Large-scale Benchmark for Improved Object Detector Pre-training

BigDetection: A Large-scale Benchmark for Improved Object Detector Pre-training By Likun Cai, Zhi Zhang, Yi Zhu, Li Zhang, Mu Li, Xiangyang Xue. This

290 Dec 29, 2022

Source code for "Taming Visually Guided Sound Generation" (Oral at the BMVC 2021)

Taming Visually Guided Sound Generation • [Project Page] • [ArXiv] • [Poster] • • Listen for the samples on our project page. Overview We propose to t

226 Jan 03, 2023

A new video text spotting framework with Transformer

TransVTSpotter: End-to-end Video Text Spotter with Transformer Introduction A Multilingual, Open World Video Text Dataset and End-to-end Video Text Sp

67 Jan 03, 2023

[CVPR 2021] Monocular depth estimation using wavelets for efficiency

Single Image Depth Prediction with Wavelet Decomposition Michaël Ramamonjisoa, Michael Firman, Jamie Watson, Vincent Lepetit and Daniyar Turmukhambeto

205 Jan 02, 2023

A Python Package for Portfolio Optimization using the Critical Line Algorithm

PyCLA A Python Package for Portfolio Optimization using the Critical Line Algorithm Getting started To use PyCLA, clone the repo and install the requi

19 Oct 11, 2022

Dealing With Misspecification In Fixed-Confidence Linear Top-m Identification

Dealing With Misspecification In Fixed-Confidence Linear Top-m Identification This repository is the official implementation of [Dealing With Misspeci

0 Oct 25, 2021

Implementing Vision Transformer (ViT) in PyTorch

Lightning-Hydra-Template A clean and scalable template to kickstart your deep learning project 🚀 ⚡ 🔥 Click on Use this template to initialize new re

2 Dec 24, 2021

Source code of CIKM2021 Long Paper "PSSL: Self-supervised Learning for Personalized Search with Contrastive Sampling".

PSSL Source code of CIKM2021 Long Paper "PSSL: Self-supervised Learning for Personalized Search with Contrastive Sampling". It consists of the pre-tra

2 Dec 21, 2021

Scikit-learn compatible estimation of general graphical models

skggm : Gaussian graphical models using the scikit-learn API In the last decade, learning networks that encode conditional independence relationships

213 Jan 02, 2023

Tech Resources for Academic Communities

Free tech resources for faculty, students, researchers, life-long learners, and academic community builders for use in tech based courses, workshops, and hackathons.

2.5k Jan 04, 2023

[CVPR2021 Oral] FFB6D: A Full Flow Bidirectional Fusion Network for 6D Pose Estimation.

FFB6D This is the official source code for the CVPR2021 Oral work, FFB6D: A Full Flow Biderectional Fusion Network for 6D Pose Estimation. (Arxiv) Tab

201 Dec 28, 2022

Voice Conversion Using Speech-to-Speech Neuro-Style Transfer

This repo contains the official implementation of the VAE-GAN from the INTERSPEECH 2020 paper Voice Conversion Using Speech-to-Speech Neuro-Style Transfer.

93 Jan 05, 2023