A Lightweight Experiment & Resource Monitoring Tool 📺

Related tags

Deep Learningmle-monitor
Overview

Lightweight Experiment & Resource Monitoring 📺

Pyversions PyPI version Code style: black Colab codecov

"Did I already run this experiment before? How many resources are currently available on my cluster?" If these are common questions you encounter during your daily life as a researcher, then mle-monitor is made for you. It provides a lightweight API for tracking your experiments using a pickle protocol database (e.g. for hyperparameter searches and/or multi-configuration/multi-seed runs). Furthermore, it comes with built-in resource monitoring on Slurm/Grid Engine clusters and local machines/servers.

mle-monitor provides three core functionalities:

  • MLEProtocol: A composable protocol database API for ML experiments.
  • MLEResource: A tool for obtaining server/cluster usage statistics.
  • MLEDashboard: A dashboard visualizing resource usage & experiment protocol.

To get started I recommend checking out the colab notebook and an example workflow.

drawing

MLEProtocol: Keeping Track of Your Experiments 📝 

from mle_monitor import MLEProtocol

# Load protocol database or create new one -> print summary
protocol_db = MLEProtocol("mle_protocol.db", verbose=False)
protocol_db.summary(tail=10, verbose=True)

# Draft data to store in protocol & add it to the protocol
meta_data = {
    "purpose": "Grid search",  # Purpose of experiment
    "project_name": "MNIST",  # Project name of experiment
    "experiment_type": "hyperparameter-search",  # Type of experiment
    "experiment_dir": "experiments/logs",  # Experiment directory
    "num_total_jobs": 10,  # Number of total jobs to run
    ...
}
new_experiment_id = protocol_db.add(meta_data)

# ... train your 10 (pseudo) networks/complete respective jobs
for i in range(10):
    protocol_db.update_progress_bar(new_experiment_id)

# Wrap up an experiment (store completion time, etc.)
protocol_db.complete(new_experiment_id)

The meta data can contain the following keys:

Search Type Description Default
purpose Purpose of experiment 'None provided'
project_name Project name of experiment 'default'
exec_resource Resource jobs are run on 'local'
experiment_dir Experiment log storage directory 'experiments'
experiment_type Type of experiment to run 'single'
base_fname Main code script to execute 'main.py'
config_fname Config file path of experiment 'base_config.yaml'
num_seeds Number of evaluations seeds 1
num_total_jobs Number of total jobs to run 1
num_job_batches Number of jobs in single batch 1
num_jobs_per_batch Number of sequential job batches 1
time_per_job Expected duration: days-hours-minutes '00:01:00'
num_cpus Number of CPUs used in job 1
num_gpus Number of GPUs used in job 0

Additionally you can synchronize the protocol with a Google Cloud Storage (GCS) bucket by providing cloud_settings. In this case also the results stored in experiment_dir will be uploaded to the GCS bucket, when you call protocol.complete().

# Define GCS settings - requires 'GOOGLE_APPLICATION_CREDENTIALS' env var.
cloud_settings = {
    "project_name": "mle-toolbox",  # GCP project name
    "bucket_name": "mle-protocol",  # GCS bucket name
    "use_protocol_sync": True,  # Whether to sync the protocol to GCS
    "use_results_storage": True,  # Whether to sync experiment_dir to GCS
}
protocol_db = MLEProtocol("mle_protocol.db", cloud_settings, verbose=True)

The MLEResource: Keeping Track of Your Resources 📉

On Your Local Machine

from mle_monitor import MLEResource

# Instantiate local resource and get usage data
resource = MLEResource(resource_name="local")
resource_data = resource.monitor()

On a Slurm Cluster

resource = MLEResource(
    resource_name="slurm-cluster",
    monitor_config={"partitions": ["<partition-1>", "<partition-2>"]},
)

On a Grid Engine Cluster

resource = MLEResource(
    resource_name="sge-cluster",
    monitor_config={"queues": ["<queue-1>", "<queue-2>"]}
)

The MLEDashboard: Dashboard Visualization 🎞️ 

from mle_monitor import MLEDashboard

# Instantiate dashboard with protocol and resource
dashboard = MLEDashboard(protocol, resource)

# Get a static snapshot of the protocol & resource utilisation printed in console
dashboard.snapshot()

# Run monitoring in while loop - dashboard
dashboard.live()

Installation ⏳

A PyPI installation is available via:

pip install mle-monitor

Alternatively, you can clone this repository and afterwards 'manually' install it:

git clone https://github.com/mle-infrastructure/mle-monitor.git
cd mle-monitor
pip install -e .

Development & Milestones for Next Release

You can run the test suite via python -m pytest -vv tests/. If you find a bug or are missing your favourite feature, feel free to contact me @RobertTLange or create an issue 🤗 .

You might also like...
Meta Representation Transformation for Low-resource Cross-lingual Learning

MetaXL: Meta Representation Transformation for Low-resource Cross-lingual Learning This repo hosts the code for MetaXL, published at NAACL 2021. [Meta

Microsoft 36 Aug 17, 2022
OpenDILab RL Kubernetes Custom Resource and Operator Lib

DI Orchestrator DI Orchestrator is designed to manage DI (Decision Intelligence) jobs using Kubernetes Custom Resource and Operator. Prerequisites A w

OpenDILab 205 Dec 29, 2022
Punctuation Restoration using Transformer Models for High-and Low-Resource Languages
Punctuation Restoration using Transformer Models for High-and Low-Resource Languages

Punctuation Restoration using Transformer Models This repository contins official implementation of the paper Punctuation Restoration using Transforme

Tanvirul Alam 142 Jan 1, 2023
Byte-based multilingual transformer TTS for low-resource/few-shot language adaptation.

One model to speak them all 🌎 Audio Language Text ▷ Chinese 人人生而自由，在尊严和权利上一律平等。 ▷ English All human beings are born free and equal in dignity and rig

Mutian He 60 Nov 14, 2022
PyTorch Implementation of [1611.06440] Pruning Convolutional Neural Networks for Resource Efficient Inference

PyTorch implementation of [1611.06440 Pruning Convolutional Neural Networks for Resource Efficient Inference] This demonstrates pruning a VGG16 based

Jacob Gildenblat 836 Dec 26, 2022
Real-Time Social Distance Monitoring tool using Computer Vision
Real-Time Social Distance Monitoring tool using Computer Vision

Social Distance Detector A Real-Time Social Distance Monitoring Tool Table of Contents Motivation YOLO Theory Detection Output Tech Stack Functionalit

Pranav B 13 Oct 14, 2022
An air quality monitoring service with a Raspberry Pi and a SDS011 sensor.

Raspberry Pi Air Quality Monitor A simple air quality monitoring service for the Raspberry Pi. Installation Clone the repository and run the following

rydercalmdown 24 Dec 9, 2022
Attendance Monitoring with Face Recognition using Python
Attendance Monitoring with Face Recognition using Python

Attendance Monitoring with Face Recognition using Python A python GUI integrated attendance system using face recognition to take attendance. In this

Vaibhav Rajput 2 Jun 21, 2022
Complete system for facial identity system. Include one-shot model, database operation, features visualization, monitoring

Complete system for facial identity system. Include one-shot model, database operation, features visualization, monitoring

null 2 Dec 28, 2021
Comments
  • Is the dashboard pooling squeue?

    Is the dashboard pooling squeue?

    Hey, Thanks for publishing the library, the dashboard looks great!

    However, I was a bit concerned to see you are using squeue since the official documentation says

    "Executing squeue sends a remote procedure call to slurmctld. If enough calls from squeue or other Slurm client commands that send remote procedure calls to the slurmctld daemon come in at once, it can result in a degradation of performance of the slurmctld daemon, possibly resulting in a denial of service.

    Do not run squeue or other Slurm client commands that send remote procedure calls to slurmctld from loops in shell scripts or other programs. Ensure that programs limit calls to squeue to the minimum necessary for the information you are trying to gather."

    Do you poll squeue or is there some other, smarter management of it that I missed?

    Thanks, Eliahu

    opened by eliahuhorwitz 0
Releases(v0.0.1)

  • v0.0.1(Dec 9, 2021)

    Basic API for MLEProtocol, MLEResource & MLEDashboard:

    from mle_monitor import MLEProtocol

# Load protocol database or create new one -> print summary
protocol_db = MLEProtocol("mle_protocol.db", verbose=False)
protocol_db.summary(tail=10, verbose=True)

# Draft data to store in protocol & add it to the protocol
meta_data = {
    "purpose": "Grid search",  # Purpose of experiment
    "project_name": "MNIST",  # Project name of experiment
    "experiment_type": "hyperparameter-search",  # Type of experiment
    "experiment_dir": "experiments/logs",  # Experiment directory
    "num_total_jobs": 10,  # Number of total jobs to run
    ...
}
new_experiment_id = protocol_db.add(meta_data)

# ... train your 10 (pseudo) networks/complete respective jobs
for i in range(10):
    protocol_db.update_progress_bar(new_experiment_id)

# Wrap up an experiment (store completion time, etc.)
protocol_db.complete(new_experiment_id)
    Source code(tar.gz)
    Source code(zip)
Owner
GitHub Repository
DCGAN-tensorflow - A tensorflow implementation of Deep Convolutional Generative Adversarial Networks

DCGAN in Tensorflow Tensorflow implementation of Deep Convolutional Generative Adversarial Networks which is a stabilize Generative Adversarial Networ

Taehoon Kim 7.1k Dec 29, 2022
Estimating and Exploiting the Aleatoric Uncertainty in Surface Normal Estimation

Estimating and Exploiting the Aleatoric Uncertainty in Surface Normal Estimation

Bae, Gwangbin 95 Jan 04, 2023
A generalist algorithm for cell and nucleus segmentation.

Cellpose | A generalist algorithm for cell and nucleus segmentation. Cellpose was written by Carsen Stringer and Marius Pachitariu. To learn about Cel

MouseLand 733 Dec 29, 2022
Neural style transfer in PyTorch.

style-transfer-pytorch An implementation of neural style transfer (A Neural Algorithm of Artistic Style) in PyTorch, supporting CPUs and Nvidia GPUs.

Katherine Crowson 395 Jan 06, 2023
particle tracking model, works with the ROMS output file(qck.nc, his.nc)

particle-tracking-model-for-ROMS particle tracking model, works with the ROMS output file(qck.nc, his.nc) description this is a 2-dimensional particle

xusheng 1 Jan 11, 2022
PyTorch Code for "Generalization in Dexterous Manipulation via Geometry-Aware Multi-Task Learning"

Generalization in Dexterous Manipulation via Geometry-Aware Multi-Task Learning [Project Page] [Paper] Wenlong Huang1, Igor Mordatch2, Pieter Abbeel1,

Wenlong Huang 40 Nov 22, 2022
ViewFormer: NeRF-free Neural Rendering from Few Images Using Transformers

ViewFormer: NeRF-free Neural Rendering from Few Images Using Transformers Official implementation of ViewFormer. ViewFormer is a NeRF-free neural rend

Jonáš Kulhánek 169 Dec 30, 2022
TRIQ implementation

TRIQ Implementation TF-Keras implementation of TRIQ as described in Transformer for Image Quality Assessment. Installation Clone this repository. Inst

Junyong You 115 Dec 30, 2022
Simple helper library to convert a collection of numpy data to tfrecord, and build a tensorflow dataset from the tfrecord.

numpy2tfrecord Simple helper library to convert a collection of numpy data to tfrecord, and build a tensorflow dataset from the tfrecord. Installation

Ryo Yonetani 2 Jan 16, 2022
交互式标注软件，暂定名 iann

iann 交互式标注软件，暂定名iann。 安装 按照官网介绍安装paddle。 安装其他依赖 pip install -r requirements.txt 运行 git clone https://github.com/PaddleCV-SIG/iann/ cd iann python iann

294 Dec 30, 2022
Hashformers is a framework for hashtag segmentation with transformers.

Hashtag segmentation is the task of automatically inserting the missing spaces between the words in a hashtag. Hashformers applies Transformer models

Ruan Chaves 41 Nov 09, 2022
Off-policy continuous control in PyTorch, with RDPG, RTD3 & RSAC

arXiv technical report soon available. we are updating the readme to be as comprehensive as possible Please ask any questions in Issues, thanks. Intro

Zhihan 31 Dec 30, 2022
EMNLP 2021 Adapting Language Models for Zero-shot Learning by Meta-tuning on Dataset and Prompt Collections

Adapting Language Models for Zero-shot Learning by Meta-tuning on Dataset and Prompt Collections Ruiqi Zhong, Kristy Lee*, Zheng Zhang*, Dan Klein EMN

Ruiqi Zhong 42 Nov 03, 2022
MADT: Offline Pre-trained Multi-Agent Decision Transformer

MADT: Offline Pre-trained Multi-Agent Decision Transformer A link to our paper can be found on Arxiv. Overview Official codebase for Offline Pre-train

Linghui Meng 51 Dec 21, 2022
CPU inference engine that delivers unprecedented performance for sparse models

The DeepSparse Engine is a CPU runtime that delivers unprecedented performance by taking advantage of natural sparsity within neural networks to reduce compute required as well as accelerate memory b

Neural Magic 1.2k Jan 09, 2023
[NeurIPS 2020] Semi-Supervision (Unlabeled Data) & Self-Supervision Improve Class-Imbalanced / Long-Tailed Learning

Rethinking the Value of Labels for Improving Class-Imbalanced Learning This repository contains the implementation code for paper: Rethinking the Valu

Yuzhe Yang 656 Dec 28, 2022
Overview of architecture and implementation of TEDS-Net, as described in MICCAI 2021: "TEDS-Net: Enforcing Diffeomorphisms in Spatial Transformers to Guarantee TopologyPreservation in Segmentations"

TEDS-Net Overview of architecture and implementation of TEDS-Net, as described in MICCAI 2021: "TEDS-Net: Enforcing Diffeomorphisms in Spatial Transfo

Madeleine K Wyburd 14 Jan 04, 2023
An offline deep reinforcement learning library

d3rlpy: An offline deep reinforcement learning library d3rlpy is an offline deep reinforcement learning library for practitioners and researchers. imp

Takuma Seno 817 Jan 02, 2023
Experiments for Fake News explainability project

fake-news-explainability Experiments for fake news explainability project This repository only contains the notebooks used to train the models and eva

Lorenzo Flores (Lj) 1 Dec 03, 2022
Contains supplementary materials for reproduce results in HMC divergence time estimation manuscript

Scalable Bayesian divergence time estimation with ratio transformations This repository contains the instructions and files to reproduce the analyses

Suchard Research Group 1 Sep 21, 2022