An interactive GUI for WhiteboxTools in a Jupyter-based environment

Related tags

Data Visualizationpythongeospatialwhiteboxjupyter-notebookgisremote-sensinglidarhydrologygeoprocessinggeomorphologygeomorphometrywhitebox-tools
Overview

whiteboxgui

image image image image image image image

An interactive GUI for WhiteboxTools in a Jupyter-based environment

Description

The whiteboxgui Python package is a Jupyter frontend for WhiteboxTools, an advanced geospatial data analysis platform developed by Prof. John Lindsay (webpage; jblindsay) at the University of Guelph's Geomorphometry and Hydrogeomatics Research Group. WhiteboxTools can be used to perform common geographical information systems (GIS) analysis operations, such as cost-distance analysis, distance buffering, and raster reclassification. Remote sensing and image processing tasks include image enhancement (e.g. panchromatic sharpening, contrast adjustments), image mosaicing, numerous filtering operations, simple classification (k-means), and common image transformations. WhiteboxTools also contains advanced tooling for spatial hydrological analysis (e.g. flow-accumulation, watershed delineation, stream network analysis, sink removal), terrain analysis (e.g. common terrain indices such as slope, curvatures, wetness index, hillshading; hypsometric analysis; multi-scale topographic position analysis), and LiDAR data processing. LiDAR point clouds can be interrogated (LidarInfo, LidarHistogram), segmented, tiled and joined, analyized for outliers, interpolated to rasters (DEMs, intensity images), and ground-points can be classified or filtered. WhiteboxTools is not a cartographic or spatial data visualization package; instead it is meant to serve as an analytical backend for other data visualization software, mainly GIS.

The WhiteboxTools currently contains 447 tools, which are each grouped based on their main function into one of the following categories: Data Tools, GIS Analysis, Hydrological Analysis, Image Analysis, LiDAR Analysis, Mathematical and Statistical Analysis, Stream Network Analysis, and Terrain Analysis. For a listing of available tools, complete with documentation and usage details, please see the WhiteboxTools User Manual.

Installation

whiteboxgui is available on PyPI. To install whiteboxgui, run this command in your terminal:

pip install whiteboxgui

whiteboxgui is also available on conda-forge. If you have Anaconda or Miniconda installed on your computer, you can create a conda Python environment to install whiteboxgui:

conda create -n wbt python
conda activate wbt
conda install mamba -c conda-forge
mamba install whiteboxgui -c conda-forge

Usage

The whiteboxgui provides a Graphical User Interface (GUI) for WhiteboxTools in a Jupyter-based environment, which can be invoked using the following Python script. You can also try image

import whiteboxgui
whiteboxgui.show(tree=True)

Imgur

Demo

tutorial

Credits

This package was created with Cookiecutter and the giswqs/pypackage project template.

You might also like...
A Jupyter - Three.js bridge
A Jupyter - Three.js bridge

pythreejs A Python / ThreeJS bridge utilizing the Jupyter widget infrastructure. Getting Started Installation Using pip: pip install pythreejs And the

Jupyter Widgets 700 Feb 17, 2021
IPython/Jupyter notebook module for Vega and Vega-Lite
IPython/Jupyter notebook module for Vega and Vega-Lite

IPython Vega IPython/Jupyter notebook module for Vega 5, and Vega-Lite 4. Notebooks with embedded visualizations can be viewed on GitHub and nbviewer.

Vega 294 Feb 12, 2021
Drag’n’drop Pivot Tables and Charts for Jupyter/IPython Notebook, care of PivotTable.js

pivottablejs: the Python module Drag’n’drop Pivot Tables and Charts for Jupyter/IPython Notebook, care of PivotTable.js Installation pip install pivot

Nicolas Kruchten 419 Feb 11, 2021
Render Jupyter notebook in the terminal
Render Jupyter notebook in the terminal

jut - JUpyter notebook Terminal viewer. The command line tool view the IPython/Jupyter notebook in the terminal. Install pip install jut Usage $jut --

Kracekumar 169 Dec 27, 2022
A Jupyter - Leaflet.js bridge
A Jupyter - Leaflet.js bridge

ipyleaflet A Jupyter / Leaflet bridge enabling interactive maps in the Jupyter notebook. Usage Selecting a basemap for a leaflet map: Loading a geojso

Jupyter Widgets 1.3k Dec 27, 2022
Draw datasets from within Jupyter.
Draw datasets from within Jupyter.

drawdata This small python app allows you to draw a dataset in a jupyter notebook. This should be very useful when teaching machine learning algorithm

vincent d warmerdam 505 Nov 27, 2022
High performance, editable, stylable datagrids in jupyter and jupyterlab
High performance, editable, stylable datagrids in jupyter and jupyterlab

An ipywidgets wrapper of regular-table for Jupyter. Examples Two Billion Rows Notebook Click Events Notebook Edit Events Notebook Styling Notebook Pan

J.P. Morgan Chase 75 Dec 15, 2022
ipyvizzu - Jupyter notebook integration of Vizzu
ipyvizzu - Jupyter notebook integration of Vizzu

ipyvizzu - Jupyter notebook integration of Vizzu. Tutorial · Examples · Repository About The Project ipyvizzu is the Jupyter Notebook integration of V

Vizzu 729 Jan 8, 2023
Interactive Data Visualization in the browser, from Python
Interactive Data Visualization in the browser, from Python

Bokeh is an interactive visualization library for modern web browsers. It provides elegant, concise construction of versatile graphics, and affords hi

Bokeh 17.1k Dec 31, 2022
Comments
  • Error code : 101 on Whitebox gui

    Error code : 101 on Whitebox gui

    Environment Information

    • whiteboxgui version:
    • Python version: 3.10
    • Operating System: MacOs

    Description

    Hello,

    I am currently trying to use the withebox LIDAR tools on my mac via the Gui (same error with Qgis), but i have a consistant error code, the 101 code.

    What I Did

    I am using Lidar data from the French national geographic institut, the file is under the .laz extension. I tried three different tools in withebox (lidarinfo, ClipLidarToPolygon, ClassifyBuldingLidar) and the same error code appears. The wired thing is that i downloaded a different set of lidar data from the same platform i downloaded the previous set and the error did no occur on that set even though i followed the same protocol.

    Does anyone have an idea why this might happen ?

    Error { kind: UnexpectedEof, message: "failed to fill whole buffer" }', /Users/johnlindsay/.cargo/registry/src/github.com-1ecc6299db9ec823/las-0.7.4/src/compression/mod.rs:78:18
note: run with `RUST_BACKTRACE=1` environment variable to display a backtrace
Error code 101
    bug 
    opened by mathiaschabal 2
  • [feature] search tools to match searching texts also with descriptions of a tool in its documentation

    [feature] search tools to match searching texts also with descriptions of a tool in its documentation

    Hello. I notice that the search tools behavior differently between whiteboxgui and the GUI from whitebox.Runner(). It seems that search tools of whiteboxgui only match the title of the tool but not the rich description from its documentation. Is it possible to enhance the search tool of whiteboxgui like that in whitebox.Runner()?

    Pics: whitebox whiteboxgui

    Feature Request 
    opened by CWen001 2
  • CVE-2007-4559 Patch

    CVE-2007-4559 Patch

    Patching CVE-2007-4559

    Hi, we are security researchers from the Advanced Research Center at Trellix. We have began a campaign to patch a widespread bug named CVE-2007-4559. CVE-2007-4559 is a 15 year old bug in the Python tarfile package. By using extract() or extractall() on a tarfile object without sanitizing input, a maliciously crafted .tar file could perform a directory path traversal attack. We found at least one unsantized extractall() in your codebase and are providing a patch for you via pull request. The patch essentially checks to see if all tarfile members will be extracted safely and throws an exception otherwise. We encourage you to use this patch or your own solution to secure against CVE-2007-4559. Further technical information about the vulnerability can be found in this blog.

    If you have further questions you may contact us through this projects lead researcher Kasimir Schulz.

    opened by TrellixVulnTeam 0
  • Add support for selecting multiple files

    Add support for selecting multiple files

    Currently, ipyfilechooser only allows selecting a single file. Some tools requires a file list (i.e., selecting multiple files). One potential workaround I can think of is to use a SelectMultiple widget and push ipyfilechooser.selected to the widget with register_callback. Related issue: https://github.com/crahan/ipyfilechooser/issues/11

    https://ipywidgets.readthedocs.io/en/latest/examples/Widget%20List.html#SelectMultiple image

    Feature Request 
    opened by giswqs 2
Releases(v2.2.0)
Owner
Qiusheng Wu
Assistant Professor of Geography at the University of Tennessee, Knoxville
Qiusheng Wu
GitHub Repository https://whiteboxgui.gishub.org
Small project to recursively calculate and plot each successive order of the Hilbert Curve

hilbert-curve Small project to recursively calculate and plot each successive order of the Hilbert Curve. After watching 3Blue1Brown's video on Hilber

Stefan Mejlgaard 2 Nov 15, 2021
Dimensionality reduction in very large datasets using Siamese Networks

ivis Implementation of the ivis algorithm as described in the paper Structure-preserving visualisation of high dimensional single-cell datasets. Ivis

beringresearch 284 Jan 01, 2023
A napari plugin for visualising and interacting with electron cryotomograms.

napari-tomoslice A napari plugin for visualising and interacting with electron cryotomograms. Installation You can install napari-tomoslice via pip: p

3 Jan 03, 2023
A simple code for plotting figure, colorbar, and cropping with python

Python Plotting Tools This repository provides a python code to generate figures (e.g., curves and barcharts) that can be used in the paper to show th

Guanying Chen 134 Jan 02, 2023
DataVisualization - The evolution of my arduino and python journey. New level of competence achieved

DataVisualization - The evolution of my arduino and python journey. New level of competence achieved

1 Jan 03, 2022
Fastest Gephi's ForceAtlas2 graph layout algorithm implemented for Python and NetworkX

ForceAtlas2 for Python A port of Gephi's Force Atlas 2 layout algorithm to Python 2 and Python 3 (with a wrapper for NetworkX and igraph). This is the

Bhargav Chippada 227 Jan 05, 2023
By default, networkx has problems with drawing self-loops in graphs.

By default, networkx has problems with drawing self-loops in graphs. It makes it hard to draw a graph with self-loops or to make a nicely looking chord diagram. This repository provides some code to

Vladimir Shitov 5 Jan 06, 2022
A Python Binder that merge 2 files with any extension by creating a new python file and compiling it to exe which runs both payloads.

Update ! ANONFILE MIGHT NOT WORK ! About A Python Binder that merge 2 files with any extension by creating a new python file and compiling it to exe w

Vesper 15 Oct 12, 2022
:bowtie: Create a dashboard with python!

Installation | Documentation | Gitter Chat | Google Group Bowtie Introduction Bowtie is a library for writing dashboards in Python. No need to know we

Jacques Kvam 753 Dec 22, 2022
Draw interactive NetworkX graphs with Altair

nx_altair Draw NetworkX graphs with Altair nx_altair offers a similar draw API to NetworkX but returns Altair Charts instead. If you'd like to contrib

Zachary Sailer 206 Dec 12, 2022
Designed a greedy algorithm based on Markov sequential decision-making process in MATLAB/Python to optimize using Gurobi solver

Designed a greedy algorithm based on Markov sequential decision-making process in MATLAB/Python to optimize using Gurobi solver, the wheel size, gear shifting sequence by modeling drivetrain constrai

Sabbella Prasanna 1 Jan 11, 2022
Certificate generating and sending system written in Python.

Certificate Generator & Sender How to use git clone https://github.com/saadhaxxan/Certificate-Generator-Sender.git cd Certificate-Generator-Sender Add

Saad Hassan 11 Dec 01, 2022
Displaying plot of death rates from past years in Poland. Data source from these years is in readme

Average-Death-Rate Displaying plot of death rates from past years in Poland The goal collect the data from a CSV file count the ADR (Average Death Rat

Oliwier Szymański 0 Sep 12, 2021
Project coded in Python using Pandas to look at changes in chase% for batters facing a pitcher first time through the order vs. thrid time

Project coded in Python using Pandas to look at changes in chase% for batters facing a pitcher first time through the order vs. thrid time

Jason Kraynak 1 Jan 07, 2022
Simple spectra visualization tool for astronomers

SpecViewer A simple visualization tool for astronomers. Dependencies Python = 3.7.4 PyQt5 = 5.15.4 pyqtgraph == 0.10.0 numpy = 1.19.4 How to use py

5 Oct 07, 2021
matplotlib: plotting with Python

Matplotlib is a comprehensive library for creating static, animated, and interactive visualizations in Python. Check out our home page for more inform

Matplotlib Developers 16.7k Jan 08, 2023
Joyplots in Python with matplotlib & pandas :chart_with_upwards_trend:

JoyPy JoyPy is a one-function Python package based on matplotlib + pandas with a single purpose: drawing joyplots (a.k.a. ridgeline plots). The code f

Leonardo Taccari 462 Jan 02, 2023
Boltzmann visualization - Visualize the Boltzmann distribution for simple quantum models of molecular motion

Boltzmann visualization - Visualize the Boltzmann distribution for simple quantum models of molecular motion

1 Jan 22, 2022
Investment and risk technologies maintained by Fortitudo Technologies.

Fortitudo Technologies Open Source This package allows you to freely explore open-source implementations of some of our fundamental technologies under

Fortitudo Technologies 11 Dec 14, 2022
trade bot connected to binance API/ websocket.,, include dashboard in plotly dash to visualize trades and balances

Crypto trade bot 1. What it is Trading bot connected to Binance API. This project made for fun. So ... Do not use to trade live before you have backte

G 3 Oct 07, 2022