Interfaces between napari and pymeshlab library to allow import, export and construction of surfaces.

Overview

napari-pymeshlab

License PyPI Python Version tests codecov napari hub

Interfaces between napari and the pymeshlab library to allow import, export and construction of surfaces.

This is a WIP and feature requests are welcome. Please check PyMeshLab for possible features

Feature list


Installation

You can install napari-pymeshlab via pip:

pip install napari-pymeshlab

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the MIT license, "napari-pymeshlab" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

You might also like...
Blender addon, import and update mixamo animation

This is a blender addon for import and update mixamo animations.

 YBlade - Import QBlade blades into Fusion 360
YBlade - Import QBlade blades into Fusion 360

YBlade - Import QBlade blades into Fusion 360 Simple script for Fusion 360 that takes QBlade blade description and constructs the blade: Usage First,

Why write code when you can import it directly from GitHub Copilot?

Copilot Importer Why write code when you can import it directly from GitHub Copilot? What is Copilot Importer? The copilot python module will dynamica

Blender addon to import images as meshes
Blender addon to import images as meshes

ImagesAsMesh Blender addon to import images as meshes. Inspired by: ImagesAsPlanes Installation It's like just about every other Blender addon. Downlo

Import Apex legends mprt files exported from Legion
Import Apex legends mprt files exported from Legion

Apex-mprt-importer-for-Blender Import Apex legends mprt files exported from Legion. REQUIRES CAST IMPORTER Usage: Use a VPK extracter to extract the m

Voldemort's Python import helper

importmagician Voldemort's Python import helper pip install importmagician Import from uninstalled Python directories Say you have a directory (relat

It is convenient to quickly import Python packages from the network.

It is convenient to quickly import Python packages from the network.

Import some key/value data to Prometheus custom-built Node Exporter in Python
Import some key/value data to Prometheus custom-built Node Exporter in Python

About the app In one particilar project, i had to import some key/value data to Prometheus. So i have decided to create my custom-built Node Exporter

A python package for batch import of resume attachments to be parsed in HrFlow.

HrFlow Importer Description A python package for batch import of resume attachments to be parsed in HrFlow. hrflow-importer is an open-source project

Comments
  • Calling the reader

    Calling the reader

    First of all, thanks for the plugin.

    I have an obj surface that I want to import and visualize in napari, however, I tried:

    from napari_pymeshlab import get_mesh_reader
    surface = ("E:/3D-Edited.obj")
    viewer.add_surface(get_mesh_reader(surface), name='surface')
    

    But I got the following error:

    ---------------------------------------------------------------------------
    TypeError                                 Traceback (most recent call last)
    Input In [3], in <module>
    ----> 1 viewer.add_surface(get_mesh_reader(surface), name='surface')
    
    File ~\.conda\envs\bio11\lib\site-packages\napari\components\viewer_model.py:4, in add_surface(self, data, colormap, contrast_limits, gamma, name, metadata, scale, translate, rotate, shear, affine, opacity, blending, shading, visible, cache, experimental_clipping_planes, wireframe, normals)
          1 from __future__ import annotations
          3 import inspect
    ----> 4 import itertools
          5 import os
          6 import warnings
    
    File ~\.conda\envs\bio11\lib\site-packages\napari\layers\surface\surface.py:169, in Surface.__init__(self, data, colormap, contrast_limits, gamma, name, metadata, scale, translate, rotate, shear, affine, opacity, blending, shading, visible, cache, experimental_clipping_planes, wireframe, normals)
        145 def __init__(
        146     self,
        147     data,
       (...)
        166     normals=None,
        167 ):
    --> 169     ndim = data[0].shape[1]
        171     super().__init__(
        172         data,
        173         ndim,
       (...)
        185         experimental_clipping_planes=experimental_clipping_planes,
        186     )
        188     self.events.add(
        189         interpolation=Event,
        190         rendering=Event,
        191         shading=Event,
        192     )
    
    TypeError: 'function' object is not subscriptable
    C:\Users\Linux\.conda\envs\bio11\lib\site-packages\ipykernel\kernelbase.py:674: RuntimeWarning: coroutine 'InProcessKernel._abort_queues' was never awaited!`
    

    I know is a newbie question.

    Thanks in advance for your help.

    opened by EdwinHernandezG 5
  • Add functions for smoothing surfaces and measuring Gaussian curvature

    Add functions for smoothing surfaces and measuring Gaussian curvature

    Hi Zach @zacsimile ,

    I'm just sending a PR with some functionality. I had developed it in another plugin, but not published. I think these functions would fit well here.

    • convex_hull
    • laplacian_smooth
    • taubin_smooth
    • simplification_clustering_decimation
    • colorize_curvature_apss

    Furthermore, I'm suggesting to change the license of your plugin to GPL, because pymeshlab is licensed GPL. So we kind of have to use GPL as well. :-/ https://github.com/cnr-isti-vclab/PyMeshLab/blob/master/LICENSE

    Please let me know what you think!

    Best, Robert

    opened by haesleinhuepf 4
  • napari-hub website lacks documentation

    napari-hub website lacks documentation

    Hi @zacsimile ,

    the napari-hub page of the plugin lacks documentation. If you delete .napari/description.md and push an update to pypi, then the readme.md will be shown.

    If you're busy, I'm happy to send a PR :-)

    Best, Robert

    opened by haesleinhuepf 3
  • fix link to screenshot

    fix link to screenshot

    Hi @zacsimile ,

    this should fix the broken link to the image on the napari hub. It's always good if the screenshots are visible ;-)

    closes #3

    Also for fixing this, a deployment to pypi is necessary.

    Thanks! Robert

    opened by haesleinhuepf 0
Releases(v0.0.5)
Owner
Zach Marin
Zach Marin
Cylc: a workflow engine for cycling systems

Cylc: a workflow engine for cycling systems. Repository master branch: core meta-scheduler component of cylc-8 (in development); Repository 7.8.x branch: full cylc-7 system.

The Cylc Workflow Engine 205 Dec 20, 2022
Results of Robot Framework 5.0 survey

Robot Framework 5.0 survey results We had a survey asking what features Robot Framework community members would like to see in the forthcoming Robot F

Pekka Klärck 2 Oct 16, 2021
Scientific color maps and standardization tools

Scicomap is a package that provides scientific color maps and tools to standardize your favourite color maps if you don't like the built-in ones. Scicomap currently provides sequential, bi-sequential

Thomas Bury 14 Nov 30, 2022
A curated collection of Amazing Python scripts from Basics to Advance with automation task scripts

📑 Introduction A curated collection of Amazing Python scripts from Basics to Advance with automation task scripts. This is your Personal space to fin

Amitesh kumar mishra 1 Jan 22, 2022
Runtime fault injection platform by Daniele Rizzieri (2021)

GDBitflip [v1.04] Runtime fault injection platform by Daniele Rizzieri (2021) This platform executes N times a binary and during each execution it inj

Daniele Rizzieri 1 Dec 07, 2021
This repository contains the exercices for the robotics class at Supaero, 2022.

Supaero robotics, 2022 This repository contains the exercices for the robotics class at Supaero, 2022. The exercices are organized by notebook. Each n

Gepetto team, LAAS-CNRS 5 Aug 01, 2022
BloodCheck enables Red and Blue Teams to manage multiple Neo4j databases and run Cypher queries against a BloodHound dataset.

BloodCheck BloodCheck enables Red and Blue Teams to manage multiple Neo4j databases and run Cypher queries against a BloodHound dataset. Installation

Mr B0b 16 Nov 05, 2021
Display your data in an attractive way in your notebook!

Bloxs Bloxs is a simple python package that helps you display information in an attractive way (formed in blocks). Perfect for building dashboards, re

MLJAR 192 Dec 28, 2022
A pomodoro app written in Python

Pomodoro It's a pomodoro app written in Python. You can minimize it while you're working if you want to, it'll pop up on your screen when the timer is

Yiğit 1 Dec 20, 2021
Organize seu linux - organize your linux

OrganizeLinux Organize seu linux - organize your linux Organize seu linux Uma forma rápida de separar arquivos dispersos em pastas. formatos a serem c

Marcus Vinícius Ribeiro Andrade 1 Nov 30, 2021
A simple countdown timer in eazy code to show timer with python

Countdown_Timer The simple CLI countdown timer in eazy code to show timer How Work First you fill the input by int-- (Enter the time in Seconds:) for

Yasin Rezvani 3 Nov 15, 2022
SHF TEST BACKEND

➰ SHF TEST BACKEND ➿ 🐙 Goals Dada una matriz de números enteros. Obtenga el elemento máximo en la matriz que produce la suma más pequeña al agregar t

Wilmer Rodríguez S 1 Dec 19, 2021
Convert your Gyrosco.pe travels to GPX files

gyroscope2gpx This little python joint will do you a favor of taking your "Travel" export from Gyroscope (https://gyrosco.pe) and turn it into a bunch

nick g 4 Oct 02, 2022
YunoHost is an operating system aiming to simplify as much as possible the administration of a server.

YunoHost is an operating system aiming to simplify as much as possible the administration of a server. This repository corresponds to the core code, written mostly in Python and Bash.

YunoHost 1.5k Jan 09, 2023
Example applications, dashboards, scripts, notebooks, and other utilities built using Polygon.io

Polygon.io Examples Example applications, dashboards, scripts, notebooks, and other utilities built using Polygon.io. Examples Preview Name Type Langu

Tim Paine 4 Jun 01, 2022
Provide Prometheus url_sd compatible API Endpoint with data from Netbox

netbox-plugin-prometheus-sd Provide Prometheus http_sd compatible API Endpoint with data from Netbox. HTTP SD is a new feature in Prometheus and not a

Felix Peters 66 Dec 19, 2022
Astroquery is an astropy affiliated package that contains a collection of tools to access online Astronomical data.

Astroquery is an astropy affiliated package that contains a collection of tools to access online Astronomical data.

The Astropy Project 631 Jan 05, 2023
A Python program for calculating the 95%CI for GNSS-derived site velocities

GNSS_Vel_95%CI A Python program for calculating the 95%CI for GNSS-derived site velocities Function_GNSS_95CI.py is a Python function for calculating

<a href=[email protected]"> 4 Dec 16, 2022
Repls goes to sleep due to inactivity, but to keep it awake, simply host a webserver and ping it.

Repls goes to sleep due to inactivity, but to keep it awake, simply host a webserver and ping it. This repo will help you make a webserver with a bit of console controls.

2 Mar 01, 2022
A partial-transpiler that converts a subset of Python to the Folders esoteric programming language

Py2Folders A partial-transpiler that converts a subset of Python to the Folders esoteric programming language Folders Folders is an esoteric programmi

Daniel Johnson 1 Dec 23, 2021