Reviving Iterative Training with Mask Guidance for Interactive Segmentation

Overview

Reviving Iterative Training with Mask Guidance for Interactive Segmentation

Open In Colab The MIT License

drawing drawing

This repository provides the source code for training and testing state-of-the-art click-based interactive segmentation models with the official PyTorch implementation of the following paper:

Reviving Iterative Training with Mask Guidance for Interactive Segmentation
Konstantin Sofiiuk, Ilia Petrov, Anton Konushin
Samsung AI Center Moscow
https://arxiv.org/abs/2102.06583

Abstract: Recent works on click-based interactive segmentation have demonstrated state-of-the-art results by using various inference-time optimization schemes. These methods are considerably more computationally expensive compared to feedforward approaches, as they require performing backward passes through a network during inference and are hard to deploy on mobile frameworks that usually support only forward passes. In this paper, we extensively evaluate various design choices for interactive segmentation and discover that new state-of-the-art results can be obtained without any additional optimization schemes. Thus, we propose a simple feedforward model for click-based interactive segmentation that employs the segmentation masks from previous steps. It allows not only to segment an entirely new object, but also to start with an external mask and correct it. When analyzing the performance of models trained on different datasets, we observe that the choice of a training dataset greatly impacts the quality of interactive segmentation. We find that the models trained on a combination of COCO and LVIS with diverse and high-quality annotations show performance superior to all existing models.

Setting up an environment

This framework is built using Python 3.6 and relies on the PyTorch 1.4.0+. The following command installs all necessary packages:

pip3 install -r requirements.txt

You can also use our Dockerfile to build a container with the configured environment.

If you want to run training or testing, you must configure the paths to the datasets in config.yml.

Interactive Segmentation Demo

drawing

The GUI is based on TkInter library and its Python bindings. You can try our interactive demo with any of the provided models. Our scripts automatically detect the architecture of the loaded model, just specify the path to the corresponding checkpoint.

Examples of the script usage:

# This command runs interactive demo with HRNet18 ITER-M model from cfg.INTERACTIVE_MODELS_PATH on GPU with id=0
# --checkpoint can be relative to cfg.INTERACTIVE_MODELS_PATH or absolute path to the checkpoint
python3 demo.py --checkpoint=hrnet18_cocolvis_itermask_3p --gpu=0

# This command runs interactive demo with HRNet18 ITER-M model from /home/demo/isegm/weights/
# If you also do not have a lot of GPU memory, you can reduce --limit-longest-size (default=800)
python3 demo.py --checkpoint=/home/demo/fBRS/weights/hrnet18_cocolvis_itermask_3p --limit-longest-size=400

# You can try the demo in CPU only mode
python3 demo.py --checkpoint=hrnet18_cocolvis_itermask_3p --cpu
Running demo in docker
# activate xhost
xhost +
docker run -v "$PWD":/tmp/ \
           -v /tmp/.X11-unix:/tmp/.X11-unix \
           -e DISPLAY=$DISPLAY  \
           python3 demo.py --checkpoint resnet34_dh128_sbd --cpu

Controls:

Key Description
Left Mouse Button Place a positive click
Right Mouse Button Place a negative click
Scroll Wheel Zoom an image in and out
Right Mouse Button +
Move Mouse
Move an image
Space Finish the current object mask
Initializing the ITER-M models with an external segmentation mask

drawing

According to our paper, ITER-M models take an image, encoded user input, and a previous step mask as their input. Moreover, a user can initialize the model with an external mask before placing any clicks and correct this mask using the same interface. As it turns out, our models successfully handle this situation and make it possible to change the mask.

To initialize any ITER-M model with an external mask use the "Load mask" button in the menu bar.

Interactive segmentation options
  • ZoomIn (can be turned on/off using the checkbox)
    • Skip clicks - the number of clicks to skip before using ZoomIn.
    • Target size - ZoomIn crop is resized so its longer side matches this value (increase for large objects).
    • Expand ratio - object bbox is rescaled with this ratio before crop.
    • Fixed crop - ZoomIn crop is resized to (Target size, Target size).
  • BRS parameters (BRS type can be changed using the dropdown menu)
    • Network clicks - the number of first clicks that are included in the network's input. Subsequent clicks are processed only using BRS (NoBRS ignores this option).
    • L-BFGS-B max iterations - the maximum number of function evaluation for each step of optimization in BRS (increase for better accuracy and longer computational time for each click).
  • Visualisation parameters
    • Prediction threshold slider adjusts the threshold for binarization of probability map for the current object.
    • Alpha blending coefficient slider adjusts the intensity of all predicted masks.
    • Visualisation click radius slider adjusts the size of red and green dots depicting clicks.

Datasets

We train all our models on SBD and COCO+LVIS and evaluate them on GrabCut, Berkeley, DAVIS, SBD and PascalVOC. We also provide links to additional datasets: ADE20k and OpenImages, that are used in ablation study.

Dataset Description Download Link
ADE20k 22k images with 434k instances (total) official site
OpenImages 944k images with 2.6M instances (total) official site
MS COCO 118k images with 1.2M instances (train) official site
LVIS v1.0 100k images with 1.2M instances (total) official site
COCO+LVIS* 99k images with 1.5M instances (train) original LVIS images +
our combined annotations
SBD 8498 images with 20172 instances for (train)
2857 images with 6671 instances for (test)
official site
Grab Cut 50 images with one object each (test) GrabCut.zip (11 MB)
Berkeley 96 images with 100 instances (test) Berkeley.zip (7 MB)
DAVIS 345 images with one object each (test) DAVIS.zip (43 MB)
Pascal VOC 1449 images with 3417 instances (validation) official site
COCO_MVal 800 images with 800 instances (test) COCO_MVal.zip (127 MB)

Don't forget to change the paths to the datasets in config.yml after downloading and unpacking.

(*) To prepare COCO+LVIS, you need to download original LVIS v1.0, then download and unpack our pre-processed annotations that are obtained by combining COCO and LVIS dataset into the folder with LVIS v1.0.

Testing

Pretrained models

We provide pretrained models with different backbones for interactive segmentation.

You can find model weights and evaluation results in the tables below:

Train
Dataset
Model GrabCut Berkeley SBD DAVIS Pascal
VOC
COCO
MVal
NoC
85%
NoC
90%
NoC
90%
NoC
85%
NoC
90%
NoC
85%
NoC
90%
NoC
85%
NoC
90%
SBD HRNet18 IT-M
(38.8 MB)
1.76 2.04 3.22 3.39 5.43 4.94 6.71 2.51 4.39
COCO+
LVIS
HRNet18
(38.8 MB)
1.54 1.70 2.48 4.26 6.86 4.79 6.00 2.59 3.58
HRNet18s IT-M
(16.5 MB)
1.54 1.68 2.60 4.04 6.48 4.70 5.98 2.57 3.33
HRNet18 IT-M
(38.8 MB)
1.42 1.54 2.26 3.80 6.06 4.36 5.74 2.28 2.98
HRNet32 IT-M
(119 MB)
1.46 1.56 2.10 3.59 5.71 4.11 5.34 2.57 2.97

Evaluation

We provide the script to test all the presented models in all possible configurations on GrabCut, Berkeley, DAVIS, Pascal VOC, and SBD. To test a model, you should download its weights and put them in ./weights folder (you can change this path in the config.yml, see INTERACTIVE_MODELS_PATH variable). To test any of our models, just specify the path to the corresponding checkpoint. Our scripts automatically detect the architecture of the loaded model.

The following command runs the NoC evaluation on all test datasets (other options are displayed using '-h'):

python3 scripts/evaluate_model.py <brs-mode> --checkpoint=<checkpoint-name>

Examples of the script usage:

# This command evaluates HRNetV2-W18-C+OCR ITER-M model in NoBRS mode on all Datasets.
python3 scripts/evaluate_model.py NoBRS --checkpoint=hrnet18_cocolvis_itermask_3p

# This command evaluates HRNet-W18-C-Small-v2+OCR ITER-M model in f-BRS-B mode on all Datasets.
python3 scripts/evaluate_model.py f-BRS-B --checkpoint=hrnet18s_cocolvis_itermask_3p

# This command evaluates HRNetV2-W18-C+OCR ITER-M model in NoBRS mode on GrabCut and Berkeley datasets.
python3 scripts/evaluate_model.py NoBRS --checkpoint=hrnet18_cocolvis_itermask_3p --datasets=GrabCut,Berkeley

Jupyter notebook

You can also interactively experiment with our models using test_any_model.ipynb Jupyter notebook.

Training

We provide the scripts for training our models on the SBD dataset. You can start training with the following commands:

# ResNet-34 non-iterative baseline model
python3 train.py models/noniterative_baselines/r34_dh128_cocolvis.py --gpus=0 --workers=4 --exp-name=first-try

# HRNet-W18-C-Small-v2+OCR ITER-M model
python3 train.py models/iter_mask/hrnet18s_cocolvis_itermask_3p.py --gpus=0 --workers=4 --exp-name=first-try

# HRNetV2-W18-C+OCR ITER-M model
python3 train.py models/iter_mask/hrnet18_cocolvis_itermask_3p.py --gpus=0,1 --workers=6 --exp-name=first-try

# HRNetV2-W32-C+OCR ITER-M model
python3 train.py models/iter_mask/hrnet32_cocolvis_itermask_3p.py --gpus=0,1,2,3 --workers=12 --exp-name=first-try

For each experiment, a separate folder is created in the ./experiments with Tensorboard logs, text logs, visualization and checkpoints. You can specify another path in the config.yml (see EXPS_PATH variable).

Please note that we trained ResNet-34 and HRNet-18s on 1 GPU, HRNet-18 on 2 GPUs, HRNet-32 on 4 GPUs (we used Nvidia Tesla P40 for training). To train on a different GPU you should adjust the batch size using the command line argument --batch-size or change the default value in a model script.

We used the pre-trained HRNetV2 models from the official repository. If you want to train interactive segmentation with these models, you need to download the weights and specify the paths to them in config.yml.

License

The code is released under the MIT License. It is a short, permissive software license. Basically, you can do whatever you want as long as you include the original copyright and license notice in any copy of the software/source.

Citation

If you find this work is useful for your research, please cite our papers:

@article{reviving2021,
  title={Reviving Iterative Training with Mask Guidance for Interactive Segmentation},
  author={Konstantin Sofiiuk, Ilia Petrov, Anton Konushin},
  journal={arXiv preprint arXiv:2102.06583},
  year={2021}
}

@article{fbrs2020,
  title={f-BRS: Rethinking Backpropagating Refinement for Interactive Segmentation},
  author={Konstantin Sofiiuk, Ilia Petrov, Olga Barinova, Anton Konushin},
  journal={arXiv preprint arXiv:2001.10331},
  year={2020}
}
Comments
  • Training time

    Training time

    Hello,

    Great work and GitHub repository! I'm curious about the duration needed to complete training, was it a matter of days or weeks (for the Nvidia Tesla P40 GPUs you used)?

    Best!

    opened by UndecidedBoy 2
  • Little confusing on a result

    Little confusing on a result

    Happy to read your great work again.

    I am confusing about the result in Table 1 and Table 3. In Table 1, it shows that HRNet-18(Conv1S, Disk5) achieve 6.90 on DAVIS. In the first part of ablation studies(section 5.2), you claim that you use HRNet with the Conv1S input scheme and encode clicks with disks of radius 5 in all other experiments. But in Table 3, the DAVIS result of HRNet-18 trained on SBD is 7.17. I don't understand the difference between them.

    opened by kleinzcy 2
  • Using prior masks

    Using prior masks

    Hello!

    Thank you for the great work. I was wondering if you could:

    1. Point me to where in your code you utilize prior masks, I'm having trouble locating it.
    2. If it's not obvious in the code describe how you go about using past model predictions? Do you precompute these or are they thresholded and saved?

    Thank you!

    opened by joshmyersdean 1
  • Resolution of image

    Resolution of image

    Hi! Thanks for sharing amazing work. I have noticed that while using pre-trained model, it is not working as fine as your demo file works on high resolution images. But for normal resolution images it works as equally as shared demo file. Can you please help me.

    opened by iresusharma 1
  • use ade20k dataset

    use ade20k dataset

    Thanks for your job. I'm trying to train a model with ade20k, but I can't find the “annotations-object-segmentation.pkl” in the ade20k.py, line 69. Can you offer me this pkl file? thank you

    opened by Robert-Hopkins 0
  • Question: Providing points from external source - without mouse

    Question: Providing points from external source - without mouse

    Hi @ksofiyuk

    I am planning on extending your framework by allowing the definition of points via a different input source (e.g., spatial mouse) that will not have a direct connection to the PC where RITM is running. Could you please point me out in the code where you sample the clicks so I can analyze how I can put my own input instead of clicks? Thanks a lot for the help!

    Best, Matteo

    opened by matteopantano 0
  • Web Demo

    Web Demo

    Thank you for your contribution to the vision community. I just want to ask, how can I use your model for the web server? Do you have any web-based demos available? How can I use it for multi-class segmentation? I am looking for your kind response.

    opened by Ehteshamciitwah 0
  • a question about interactive segmentation

    a question about interactive segmentation

    Dear sofiiuk: We are very interested in your interactive segmentation method, but we have a question need your help. After we test your code with python, we find that this method can only segment one class type, can you give us some advise on multi-class segmentation? for example, when the user click different object, it can show its class type, such apple, car, and so on.

        Your Sincerely,
        Wang Zhipan,
    

    Sun-Yat sen university

    opened by wzp8023391 0
  • AttributeError: module 'albumentations.augmentations.functional' has no attribute 'resize'

    AttributeError: module 'albumentations.augmentations.functional' has no attribute 'resize'

    I've met this problem when trying to train the model. AttributeError: module 'albumentations.augmentations.functional' has no attribute 'resize' my albumentations's version is 1.2.1 image I‘ve actually check the functional.py in albumentations, there is no resize function....T.T what can I do to solce this ? QAQ

    opened by ermu2001 1
Owner
Visual Understanding Lab @ Samsung AI Center Moscow
Visual Understanding Lab @ Samsung AI Center Moscow
A Review of Deep Learning Techniques for Markerless Human Motion on Synthetic Datasets

HOW TO USE THIS PROJECT A Review of Deep Learning Techniques for Markerless Human Motion on Synthetic Datasets Based on DeepLabCut toolbox, we run wit

1 Jan 10, 2022
OBBDetection is a oriented object detection library, which is based on MMdetection.

OBBDetection news: We are now updating OBBDetection to new vision based on MMdetection v2.10, which has more advanced models and more efficient featur

jbwang1997 401 Jan 02, 2023
SegNet-Basic with Keras

SegNet-Basic: What is Segnet? Deep Convolutional Encoder-Decoder Architecture for Semantic Pixel-wise Image Segmentation Segnet = (Encoder + Decoder)

Yad Konrad 81 Jun 30, 2022
Tello Drone Trajectory Tracking

With this library you can track the trajectory of your tello drone or swarm of drones in real time.

Kamran Asgarov 2 Oct 12, 2022
Demo for the paper "Overlap-aware low-latency online speaker diarization based on end-to-end local segmentation"

Streaming speaker diarization Overlap-aware low-latency online speaker diarization based on end-to-end local segmentation by Juan Manuel Coria, Hervé

Juanma Coria 187 Jan 06, 2023
Implementation of Memformer, a Memory-augmented Transformer, in Pytorch

Memformer - Pytorch Implementation of Memformer, a Memory-augmented Transformer, in Pytorch. It includes memory slots, which are updated with attentio

Phil Wang 60 Nov 06, 2022
E2EDNA2 - An automated pipeline for simulation of DNA aptamers complexed with small molecules and short peptides

E2EDNA2 - An automated pipeline for simulation of DNA aptamers complexed with small molecules and short peptides

11 Nov 08, 2022
Technical Analysis library in pandas for backtesting algotrading and quantitative analysis

bta-lib - A pandas based Technical Analysis Library bta-lib is pandas based technical analysis library and part of the backtrader family. Links Main P

DRo 393 Dec 20, 2022
This is the code for the paper "Jinkai Zheng, Xinchen Liu, Wu Liu, Lingxiao He, Chenggang Yan, Tao Mei: Gait Recognition in the Wild with Dense 3D Representations and A Benchmark. (CVPR 2022)"

Gait3D-Benchmark This is the code for the paper "Jinkai Zheng, Xinchen Liu, Wu Liu, Lingxiao He, Chenggang Yan, Tao Mei: Gait Recognition in the Wild

82 Jan 04, 2023
Pytorch implementation of the Variational Recurrent Neural Network (VRNN).

VariationalRecurrentNeuralNetwork Pytorch implementation of the Variational RNN (VRNN), from A Recurrent Latent Variable Model for Sequential Data. Th

emmanuel 251 Dec 17, 2022
The official implementation of ICCV paper "Box-Aware Feature Enhancement for Single Object Tracking on Point Clouds".

Box-Aware Tracker (BAT) Pytorch-Lightning implementation of the Box-Aware Tracker. Box-Aware Feature Enhancement for Single Object Tracking on Point C

Kangel Zenn 5 Mar 26, 2022
Using the provided dataset which includes various book features, in order to predict the price of books, using various proposed methods and models.

Using the provided dataset which includes various book features, in order to predict the price of books, using various proposed methods and models.

Nikolas Petrou 1 Jan 13, 2022
GeneDisco is a benchmark suite for evaluating active learning algorithms for experimental design in drug discovery.

GeneDisco is a benchmark suite for evaluating active learning algorithms for experimental design in drug discovery.

22 Dec 12, 2022
An end-to-end machine learning library to directly optimize AUC loss

LibAUC An end-to-end machine learning library for AUC optimization. Why LibAUC? Deep AUC Maximization (DAM) is a paradigm for learning a deep neural n

Andrew 75 Dec 12, 2022
CTF Challenge for CSAW Finals 2021

Terminal Velocity Misc CTF Challenge for CSAW Finals 2021 This is a challenge I've had in mind for almost 15 years and never got around to building un

Jordan 6 Jul 30, 2022
(AAAI2020)Grapy-ML: Graph Pyramid Mutual Learning for Cross-dataset Human Parsing

Grapy-ML: Graph Pyramid Mutual Learning for Cross-dataset Human Parsing This repository contains pytorch source code for AAAI2020 oral paper: Grapy-ML

54 Aug 04, 2022
Contrastive Learning for Many-to-many Multilingual Neural Machine Translation(mCOLT/mRASP2), ACL2021

Contrastive Learning for Many-to-many Multilingual Neural Machine Translation(mCOLT/mRASP2), ACL2021 The code for training mCOLT/mRASP2, a multilingua

104 Jan 01, 2023
Doing fast searching of nearest neighbors in high dimensional spaces is an increasingly important problem

Benchmarking nearest neighbors Doing fast searching of nearest neighbors in high dimensional spaces is an increasingly important problem, but so far t

Erik Bernhardsson 3.2k Jan 03, 2023
face property detection pytorch

This is the face property train code of project face-detection-project

i am x 2 Oct 18, 2021
Who calls the shots? Rethinking Few-Shot Learning for Audio (WASPAA 2021)

rethink-audio-fsl This repo contains the source code for the paper "Who calls the shots? Rethinking Few-Shot Learning for Audio." (WASPAA 2021) Table

Yu Wang 34 Dec 24, 2022