Notebook and code to synthesize complex and highly dimensional datasets using Gretel APIs.

Related tags

Deep Learningtrainer
Overview

Gretel Trainer

This code is designed to help users successfully train synthetic models on complex datasets with high row and column counts. The code works by intelligently dividing a dataset into a set of smaller datasets of correlated columns that can be parallelized and then joined together.

Get Started

Running the notebook

  1. Launch the Notebook in Google Colab or your preferred environment.
  2. Add your dataset and Gretel API key to the notebook.
  3. Generate synthetic data!

NOTE: Either delete the existing or choose a new cache file name if you are starting a dataset run from scratch.

TODOs / Roadmap

  • Enable additional sampling from from trained models.
  • Detect and label encode random UIDs (preprocessing).
Comments
  • Benchmark route Amplify models through Trainer

    Benchmark route Amplify models through Trainer

    Top level change

    Now that Trainer has a GretelAmplify model, Benchmark uses Trainer for Amplify runs instead of the SDK.

    Refactor

    I refactored Benchmark's Gretel models and executors with the goal of centralizing and thus making it simpler to understand:

    • which model types use Trainer (opt-in) vs. use the SDK
    • the "compatibility requirements" for different models (currently: LSTM <= 150 columns, GPTX == 1 column)

    These had been spread across a few different places (compare.py determined Trainer/SDK, gretel/sdk.py had GPTX compatibility, gretel/trainer.py had LSTM compatibility), but now it can all be found in gretel/models.py.

    At first glance it would seem compatibility requirements could be defined on specific model subclasses to make things more polymorphic. However, Benchmark's Gretel model classes are really just friendly wrappers around specific model configurations (from the blueprints repo) and do not represent all possible instances of that model type running through Benchmark. Instead, we instruct users subclass the generic GretelModel base class when they want to provide their own specific Gretel configuration. There are two reasons for this:

    1. It's a simpler instruction (always subclass this one thing)
    2. It enables us to include model types that are not yet "first class supported," such as DGAN (which we can't support in the same way we do models like Amplify/LSTM/etc. because DGAN's config includes required fields that are specifically coupled to the data source—there is no "one size fits all" blueprint).

    Small fixes

    • fix the model_slug value for Trainer's GretelACTGAN model
      • :warning: should this be changed to a list ["actgan", "ctgan"] for a little while for a smoother transition/deprecation experience??
    • zero-index custom model runs' run-identifier to match gretel model runs (which were themselves fixed to match project names here)
    opened by mikeknep 2
  • Lift gretel model compatibility to separate module

    Lift gretel model compatibility to separate module

    What's here

    Make it easier to find the "compatibility rules" for models by lifting the logic to its own module.

    Why not add this logic to the specific model classes? Wouldn't that be more polymorphic?

    The model classes (GretelLSTM, GretelCTGAN, etc.) are wrappers around specific configurations from the blueprints repo. They do not represent every possible configuration of that model type. If a user wants to run a customized LSTM config, for example, they subclass GretelModel, not GretelLSTM:

    class MyLstm(GretelModel):
        config = "/path/to/my_lstm.yml"
    

    Note: they could subclass GretelLSTM, but 1) it's easier to tell people to just subclass GretelModel regardless of model type, and/because 2) this ultimately treats the model configuration as the source of truth.

    If someone mistakenly created a custom Gretel model like this...

    class MyGptX(GretelGPTX):
        config = "/path/to/my_amplify.yml"
    

    ...Benchmark will treat this as an Amplify model, because basically all it does with the class instance is grab the config attribute (and the name—the results output will show the name as MyGptX.)

    opened by mikeknep 1
  • Lr/artifact manifest

    Lr/artifact manifest

    Added logic for config selection and updated dictionary key to access manifest per latest internal changes.

    Note that high-dimensionality-high-record is non-existent at the moment, as is the manifest endpoint :)

    Items yet to be addressed:

    • turn off partitions for non-LSTM models
    opened by lipikaramaswamy 1
  • Add param to pass custom base configuration

    Add param to pass custom base configuration

    • Prefer config if present, otherwise use the model_type's default config.
    • This does open the door a little wider to setting an invalid config that won't be known to be bad until attempting to train. That door was already slightly ajar in that one could use model_params to set keys to invalid values.
    • Not included here, but a thought: we could validate model_type earlier (even as the very first step of __init__) to fail fast, specifically before even creating a project.
    opened by mikeknep 1
  • Remove no-op elif case from runner

    Remove no-op elif case from runner

    Particularly given that we now have a third model (Amplify) supported in Trainer, we can remove this no-op elif clause so that the runner only has special logic for / awareness of LSTM (expand up in the diff for context).

    opened by mikeknep 0
  • Switch CTGAN usages to ACTGAN.

    Switch CTGAN usages to ACTGAN.

    ACTGAN is the successor of CTGAN.

    Note (1): this change is backward compatible, as all of the parameters that CTGAN supported are supported by ACTGAN as well.

    Note (2): any previously trained CTGAN models will be still usable, i.e. it will be possible to generate new records using old CTGAN models.

    opened by pimlock 0
  • Fix off-by-one difference between project name and run ID

    Fix off-by-one difference between project name and run ID

    Quick fix so that benchmark's internal run identifier lines up with the project name in Gretel Cloud. We'll eventually have a more user-friendly and stable interface to access detailed run information, but until we figure out how exactly we want that to look and do it, this should make things a little more friendly for those willing to dive into the internals: the models from project benchmark-{timestamp}-3 will correspond to comparison.results_dict["gretel-3"] (instead of "gretel-4")

    Note: I considered just using the full project name as the identifier instead of gretel-{index}, but we don't have an equivalent to project names for user custom model runs, so I figure the current [gretel|custom]-{index} approach is still best for now.

    opened by mikeknep 0
  • Configure session before starting Benchmark comparison

    Configure session before starting Benchmark comparison

    Current behavior

    When running in an environment where no Gretel credentials can be found (e.g. Colab), when Benchmark kicks off a comparison the background threads instantiating Trainer instances will prompt for an API key. This is problematic for multiple reasons, all (I believe) due to it running in multiple background threads: it prompts multiple times, doesn't accept input and/or cache properly, and ultimately crashes.

    This fix

    Benchmark itself now checks for a configured session before kicking off any real work. It prompts (api_key="prompt") if no credentials are found, validates (validate=True) the supplied API key, and caches (cache="yes") it for all the runs it manages. The configure_session calls that happen when instantiating Trainer effectively "pass through." I've tested this by installing trainer from this branch in Colab and it is now working as expected.

    opened by mikeknep 0
  • Include dataset name in trainer uploads.

    Include dataset name in trainer uploads.

    Add original file name to data sources uploaded as part of trainer projects. This helps disambiguate the data sources from multiple trainer runs where previously they were always named trainer_0.csv, trainer_1.csv, etc.

    Also fixes StrategyRunner to not silently swallow all ApiExceptions when submitting a job, so errors not associated with max job limit are still thrown and surfaced to the user.

    opened by kboyd 0
  • Auto-determine best model from training data

    Auto-determine best model from training data

    Rather than create a GretelAuto model class that would need to override or work around several _BaseConfig details (validation, max/limit values, etc.), my goal here is to establish the convention that model type is optional and if you don't specify one when instantiating the Trainer, you're OK with us choosing for you. This is a change from the current behavior (optional but default to LSTM). In this case, we defer setting the trainer instance's self.model_type until such time as we can determine the best model to use: namely, at train time when a dataset has been provided.

    I'm a little unclear on the load (from cache) workflow, which in this branch's implementation would set the StrategyRunner's model_config to None. I think this is OK because the only methods referencing that value are part of training (train_all_partitions => train_next_partition => train_partition), and that workflow is only kicked off by the Trainer's train method, which will load in data and use it to determine and set a concrete model.

    I've also added an optional delimiter parameter to train to help support files with non-comma delimiters.

    opened by mikeknep 0
  • Get average sqs score from across partitions

    Get average sqs score from across partitions

    A few ways we could slice and dice this; I figure there may be additional SQS info we want from the run in the future so I decided to expose the entire List[dict] from the runner, and let the trainer pluck out and calculate the first such aggregate, user-friendly data. I'm open to pushing more of this down to the runner and/or transforming the SQS dictionaries into first-class types (likely dataclasses) if anyone has a strong opinion or thinks it'd be useful.

    opened by mikeknep 0
  • Use artifact manifest for determine_best_model.

    Use artifact manifest for determine_best_model.

    Not fully tested. Waiting for new backend API to be available.

    Should revisit retry logic if we can reliably distinguish between a pending manifest (still being generated) and some other error. Or if retrying is included in the gretel_client interface.

    opened by kboyd 1
Releases(v0.5.0)
  • v0.5.0(Nov 18, 2022)

    What's Changed

    • GretelCTGAN has been completely removed, fully replaced by its successor, GretelACTGAN
    • GretelACTGAN uses the new tabular-actgan config by default
    • Benchmark now routes Amplify models through Trainer rather than the SDK
    • Bug fix: helper to properly configure Gretel session before starting Benchmark comparison when unset
    • Bug fix: zero-index Benchmark run ID (internal) to fix off-by-one difference with project name

    Full Changelog: https://github.com/gretelai/trainer/compare/v0.4.1...v0.5.0

    Source code(tar.gz)
    Source code(zip)
  • v0.4.1(Nov 2, 2022)

    What's Changed

    • Add pip install command and Colab disclaimer to Benchmark notebook by @mikeknep in https://github.com/gretelai/trainer/pull/22
    • Include dataset name in trainer uploads. by @kboyd in https://github.com/gretelai/trainer/pull/21
    • Docs improvements by @MasonEgger (https://github.com/gretelai/trainer/pull/23 https://github.com/gretelai/trainer/pull/24 https://github.com/gretelai/trainer/pull/28 https://github.com/gretelai/trainer/pull/26)
    • Add support for Gretel Amplify by @pimlock in https://github.com/gretelai/trainer/pull/29

    New Contributors

    • @kboyd made their first contribution in https://github.com/gretelai/trainer/pull/21
    • @MasonEgger made their first contribution in https://github.com/gretelai/trainer/pull/23
    • @pimlock made their first contribution in https://github.com/gretelai/trainer/pull/29

    Full Changelog: https://github.com/gretelai/trainer/compare/v0.4.0...v0.4.1

    Source code(tar.gz)
    Source code(zip)
  • v0.4.0(Oct 6, 2022)

    What's Changed

    • Initial release of new Benchmark module :rocket: by @mikeknep in https://github.com/gretelai/trainer/pull/19
    • Create simple-conditional-generation.ipynb :notebook: by @zredlined in https://github.com/gretelai/trainer/pull/18

    Full Changelog: https://github.com/gretelai/trainer/compare/v0.3.0...v0.4.0

    Source code(tar.gz)
    Source code(zip)
  • v0.3.0(Aug 30, 2022)

  • v0.2.3(Aug 24, 2022)

    What's Changed

    • The trainer now chooses the best model configuration based on input training data when model_type is not specified in advance at Trainer instantiation (previously defaulted to GretelLSTM)
    • train accepts an optional delimiter argument (defaults to comma when unspecified)
    • Input training data is divided more equally across row partitions
    • LSTM models generate a consistent number of records (5000) during data training (previously matched size of input training data)
    • Fixed trainer generate to synthesize the correct number of records when multiple row partitions are used
    • Fixed trainer get_sqs_score method

    Full Changelog: https://github.com/gretelai/trainer/compare/v0.2.2...v0.2.3

    Source code(tar.gz)
    Source code(zip)
  • v0.2.2(Aug 11, 2022)

    What's Changed

    • Update default model config by @zredlined in https://github.com/gretelai/trainer/pull/10
    • Remove project delete instruction by @drew in https://github.com/gretelai/trainer/pull/11
    • CTGAN and conditional data generation by @zredlined in https://github.com/gretelai/trainer/pull/12
    • Get average sqs score from across partitions by @mikeknep in https://github.com/gretelai/trainer/pull/14

    Full Changelog: https://github.com/gretelai/trainer/compare/v0.2.1...v0.2.2

    Source code(tar.gz)
    Source code(zip)
  • v0.2.1(Jun 16, 2022)

  • v0.2.0(Jun 10, 2022)

  • v0.1.0(Jun 10, 2022)

Owner
Gretel.ai
Gretel.ai Open Source Projects and Tools
Gretel.ai
Competitive Programming Club, Clinify's Official repository for CP problems hosting by club members.

Clinify-CPC_Programs This repository holds the record of the competitive programming club where the competitive coding aspirants are thriving hard and

Clinify Open Sauce 4 Aug 22, 2022
Supercharging Imbalanced Data Learning WithCausal Representation Transfer

ECRT: Energy-based Causal Representation Transfer Code for Supercharging Imbalanced Data Learning With Energy-basedContrastive Representation Transfer

Zidi Xiu 11 May 02, 2022
A lightweight Python-based 3D network multi-agent simulator. Uses a cell-based congestion model. Calculates risk, loudness and battery capacities of the agents. Suitable for 3D network optimization tasks.

AMAZ3DSim AMAZ3DSim is a lightweight python-based 3D network multi-agent simulator. It uses a cell-based congestion model. It calculates risk, battery

Daniel Hirsch 13 Nov 04, 2022
Python KNN model: Predicting a probability of getting a work visa. Tableau: Non-immigrant visas over the years.

The value of international students to the United States. Probability of getting a non-immigrant visa. Project timeline: Jan 2021 - April 2021 Project

Zinaida Dvoskina 2 Nov 21, 2021
Funnels: Exact maximum likelihood with dimensionality reduction.

Funnels This repository contains the code needed to reproduce the experiments from the paper: Funnels: Exact maximum likelihood with dimensionality re

2 Apr 21, 2022
PyTorch implementation of NIPS 2017 paper Dynamic Routing Between Capsules

Dynamic Routing Between Capsules - PyTorch implementation PyTorch implementation of NIPS 2017 paper Dynamic Routing Between Capsules from Sara Sabour,

Adam Bielski 475 Dec 24, 2022
Implementation of the state-of-the-art vision transformers with tensorflow

ViT Tensorflow This repository contains the tensorflow implementation of the state-of-the-art vision transformers (a category of computer vision model

Mohammadmahdi NouriBorji 2 Mar 16, 2022
A collection of semantic image segmentation models implemented in TensorFlow

A collection of semantic image segmentation models implemented in TensorFlow. Contains data-loaders for the generic and medical benchmark datasets.

bobby 16 Dec 06, 2019
A set of tests for evaluating large-scale algorithms for Wasserstein-2 transport maps computation.

Continuous Wasserstein-2 Benchmark This is the official Python implementation of the NeurIPS 2021 paper Do Neural Optimal Transport Solvers Work? A Co

Alexander 22 Dec 12, 2022
Resources related to our paper "CLIN-X: pre-trained language models and a study on cross-task transfer for concept extraction in the clinical domain"

CLIN-X (CLIN-X-ES) & (CLIN-X-EN) This repository holds the companion code for the system reported in the paper: "CLIN-X: pre-trained language models a

Bosch Research 4 Dec 05, 2022
Playable Video Generation

Playable Video Generation Playable Video Generation Willi Menapace, Stéphane Lathuilière, Sergey Tulyakov, Aliaksandr Siarohin, Elisa Ricci Paper: ArX

Willi Menapace 136 Dec 31, 2022
Codes of paper "Unseen Object Amodal Instance Segmentation via Hierarchical Occlusion Modeling"

Unseen Object Amodal Instance Segmentation (UOAIS) Seunghyeok Back, Joosoon Lee, Taewon Kim, Sangjun Noh, Raeyoung Kang, Seongho Bak, Kyoobin Lee This

GIST-AILAB 92 Dec 13, 2022
ESTDepth: Multi-view Depth Estimation using Epipolar Spatio-Temporal Networks (CVPR 2021)

ESTDepth: Multi-view Depth Estimation using Epipolar Spatio-Temporal Networks (CVPR 2021) Project Page | Video | Paper | Data We present a novel metho

65 Nov 28, 2022
Contains source code for the winning solution of the xView3 challenge

Winning Solution for xView3 Challenge This repository contains source code and pretrained models for my (Eugene Khvedchenya) solution to xView 3 Chall

Eugene Khvedchenya 51 Dec 30, 2022
A lightweight library designed to accelerate the process of training PyTorch models by providing a minimal

A lightweight library designed to accelerate the process of training PyTorch models by providing a minimal, but extensible training loop which is flexible enough to handle the majority of use cases,

Chris Hughes 110 Dec 23, 2022
This project aims at providing a concise, easy-to-use, modifiable reference implementation for semantic segmentation models using PyTorch.

Semantic Segmentation on PyTorch (include FCN, PSPNet, Deeplabv3, Deeplabv3+, DANet, DenseASPP, BiSeNet, EncNet, DUNet, ICNet, ENet, OCNet, CCNet, PSANet, CGNet, ESPNet, LEDNet, DFANet)

2.4k Jan 08, 2023
Supplementary code for TISMIR paper "Sliding-Window Pitch-Class Histograms as a Means of Modeling Musical Form"

Sliding-Window Pitch-Class Histograms as a Means of Modeling Musical Form This is supplementary code for the TISMIR paper Sliding-Window Pitch-Class H

1 Nov 27, 2021
A very tiny, very simple, and very secure file encryption tool.

Picocrypt is a very tiny (hence "Pico"), very simple, yet very secure file encryption tool. It uses the modern ChaCha20-Poly1305 cipher suite as well

Evan Su 1k Dec 30, 2022
This is a Image aid classification software based on python TK library development

This is a Image aid classification software based on python TK library development.

EasonChan 1 Jan 17, 2022
Flower - A Friendly Federated Learning Framework

Flower - A Friendly Federated Learning Framework Flower (flwr) is a framework for building federated learning systems. The design of Flower is based o

Adap 1.8k Jan 01, 2023