Implementation detail for paper "Multi-level colonoscopy malignant tissue detection with adversarial CAC-UNet"

Overview

Multi-level-colonoscopy-malignant-tissue-detection-with-adversarial-CAC-UNet Tweet

Implementation detail for our paper "Multi-level colonoscopy malignant tissue detection with adversarial CAC-UNet"

DigestPath 2019

The proposed scheme in this paper achieves the best results in MICCAI DigestPath2019 challenge (https://digestpath2019.grand-challenge.org/Home/) on colonoscopy tissue segmentation and classification task.

Dataset

Description of dataset can be found here: https://digestpath2019.grand-challenge.org/Dataset/

To download the the DigestPath2019 dataset, please sign the DATABASE USE AGREEMENT first at here: https://digestpath2019.grand-challenge.org/Download/

If you have problems about downing the dataset, please contact Prof. Hongsheng Li:[email protected]

Image sample:

Envs

  • Pytorch 1.0
  • Python 3+
  • cuda 9.0+

install

$ pip install -r  requirements.txt

apex : Tools for easy mixed precision and distributed training in Pytorch

$ git clone https://github.com/NVIDIA/apex
$ cd apex
$ pip install -v --no-cache-dir --global-option="--cpp_ext" --global-option="--cuda_ext" ./

Dataset

├── data/
│   ├── tissue-train-neg/     
│   ├── tissue-train-pos-v1/

Preprocessing

$ cd code/
$ python preprocessing.py

Training

$ cd code/
$ python train.py --config_file='config/cac-unet-r50.yaml'

Citation

Please cite this paper in your publications if it helps your research:

@article{zhu2021multi,
  title={Multi-level colonoscopy malignant tissue detection with adversarial CAC-UNet},
  author={Zhu, Chuang and Mei, Ke and Peng, Ting and Luo, Yihao and Liu, Jun and Wang, Ying and Jin, Mulan},
  journal={Neurocomputing},
  volume={438},
  pages={165--183},
  year={2021},
  publisher={Elsevier}
}

About the multi-level adversarial segmentation part, you can read our ICASSP paper for more details:

@inproceedings{mei2020cross,
  title={Cross-stained segmentation from renal biopsy images using multi-level adversarial learning},
  author={Mei, Ke and Zhu, Chuang and Jiang, Lei and Liu, Jun and Qiao, Yuanyuan},
  booktitle={ICASSP 2020-2020 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)},
  pages={1424--1428},
  year={2020},
  organization={IEEE}
}

Author

Ke Mei, Ting Peng, Chuang Zhu

If you have any questions, you can contact me directly.

Owner
CVSM Group - email: [email protected]
Codes of our papers are released in this GITHUB account.
CVSM Group - email: <a href=[email protected]">
The Pytorch code of "Joint Distribution Matters: Deep Brownian Distance Covariance for Few-Shot Classification", CVPR 2022 (Oral).

DeepBDC for few-shot learning        Introduction In this repo, we provide the implementation of the following paper: "Joint Distribution Matters: Dee

FeiLong 116 Dec 19, 2022
Official PyTorch implementation and pretrained models of the paper Self-Supervised Classification Network

Self-Classifier: Self-Supervised Classification Network Official PyTorch implementation and pretrained models of the paper Self-Supervised Classificat

Elad Amrani 24 Dec 21, 2022
An open framework for Federated Learning.

Welcome to Intel® Open Federated Learning Federated learning is a distributed machine learning approach that enables organizations to collaborate on m

Intel Corporation 397 Dec 27, 2022
[ICCV2021] Safety-aware Motion Prediction with Unseen Vehicles for Autonomous Driving

Safety-aware Motion Prediction with Unseen Vehicles for Autonomous Driving Safety-aware Motion Prediction with Unseen Vehicles for Autonomous Driving

Xuanchi Ren 44 Dec 03, 2022
[AAAI22] Reliable Propagation-Correction Modulation for Video Object Segmentation

Reliable Propagation-Correction Modulation for Video Object Segmentation (AAAI22) Preview version paper of this work is available at: https://arxiv.or

Xiaohao Xu 70 Dec 04, 2022
FaceVerse: a Fine-grained and Detail-controllable 3D Face Morphable Model from a Hybrid Dataset (CVPR2022)

FaceVerse FaceVerse: a Fine-grained and Detail-controllable 3D Face Morphable Model from a Hybrid Dataset Lizhen Wang, Zhiyuan Chen, Tao Yu, Chenguang

Lizhen Wang 219 Dec 28, 2022
Investigating Attention Mechanism in 3D Point Cloud Object Detection (arXiv 2021)

Investigating Attention Mechanism in 3D Point Cloud Object Detection (arXiv 2021) This repository is for the following paper: "Investigating Attention

52 Nov 19, 2022
Job Assignment System by Real-time Emotion Detection

Emotion-Detection Job Assignment System by Real-time Emotion Detection Emotion is the essential role of facial expression and it could provide a lot o

1 Feb 08, 2022
Count GitHub Stars ⭐

Count GitHub Stars per Day ⭐ Track GitHub stars per day over a date range to measure the open-source popularity of different repositories. Requirement

Ultralytics 20 Nov 20, 2022
Contrastive learning of Class-agnostic Activation Map for Weakly Supervised Object Localization and Semantic Segmentation (CVPR 2022)

CCAM (Unsupervised) Code repository for our paper "CCAM: Contrastive learning of Class-agnostic Activation Map for Weakly Supervised Object Localizati

Computer Vision Insitute, SZU 113 Dec 27, 2022
Neural Message Passing for Computer Vision

Neural Message Passing for Quantum Chemistry Implementation of different models of Neural Networks on graphs as explained in the article proposed by G

Pau Riba 310 Nov 07, 2022
VOLO: Vision Outlooker for Visual Recognition

VOLO: Vision Outlooker for Visual Recognition, arxiv This is a PyTorch implementation of our paper. We present Vision Outlooker (VOLO). We show that o

Sea AI Lab 876 Dec 09, 2022
The official implementation of A Unified Game-Theoretic Interpretation of Adversarial Robustness.

This repository is the official implementation of A Unified Game-Theoretic Interpretation of Adversarial Robustness. Requirements pip install -r requi

Jie Ren 17 Dec 12, 2022
A pyparsing-based library for parsing SOQL statements

CONTRIBUTORS WANTED!! Installation pip install python-soql-parser or, with poetry poetry add python-soql-parser Usage from python_soql_parser import p

Kicksaw 0 Jun 07, 2022
Learning Continuous Image Representation with Local Implicit Image Function

LIIF This repository contains the official implementation for LIIF introduced in the following paper: Learning Continuous Image Representation with Lo

Yinbo Chen 1k Dec 25, 2022
End-To-End Crowdsourcing

End-To-End Crowdsourcing Comparison of traditional crowdsourcing approaches to a state-of-the-art end-to-end crowdsourcing approach LTNet on sentiment

Andreas Koch 1 Mar 06, 2022
Code from Daniel Lemire, A Better Alternative to Piecewise Linear Time Series Segmentation

PiecewiseLinearTimeSeriesApproximation code from Daniel Lemire, A Better Alternative to Piecewise Linear Time Series Segmentation, SIAM Data Mining 20

Daniel Lemire 21 Oct 27, 2022
Experiments for distributed optimization algorithms

Network-Distributed Algorithm Experiments -- This repository contains a set of optimization algorithms and objective functions, and all code needed to

Boyue Li 40 Dec 04, 2022
MutualGuide is a compact object detector specially designed for embedded devices

Introduction MutualGuide is a compact object detector specially designed for embedded devices. Comparing to existing detectors, this repo contains two

ZHANG Heng 103 Dec 13, 2022
HiFi-GAN: Generative Adversarial Networks for Efficient and High Fidelity Speech Synthesis

HiFi-GAN: Generative Adversarial Networks for Efficient and High Fidelity Speech Synthesis Jungil Kong, Jaehyeon Kim, Jaekyoung Bae In our paper, we p

Rishikesh (ऋषिकेश) 31 Dec 08, 2022