Adaptive, interpretable wavelets across domains (NeurIPS 2021)

Overview

Adaptive wavelets

Wavelets which adapt given data (and optionally a pre-trained model). This yields models which are faster, more compressible, and more interpretable.

📚 docs 📖 demo notebooks

Quickstart

Installation: pip install awave or clone the repo and run python setup.py install from the repo directory

Then, can use the core functions (see simplest example in notebooks/demo_simple_2d.ipynb or notebooks/demo_simple_1d.ipynb). See the docs for more information on arguments for these functions.

Given some data X, you can run the following:

from awave.utils.misc import get_wavefun
from awave.transform2d import DWT2d

wt = DWT2d(wave='db5', J=4)
wt.fit(X=X, lr=1e-1, num_epochs=10)  # this function alternatively accepts a dataloader
X_sparse = wt(X)  # uses the learned adaptive wavelet
phi, psi, x = get_wavefun(wt)  # can also inspect the learned adaptive wavelet

To distill a pretrained model named model, simply pass it as an additional argument to the fit function:

wt.fit(X=X, pretrained_model=model,
       lr=1e-1, num_epochs=10,
       lamL1attr=5) # control how much to regularize the model's attributions

Background

Official code for using / reproducing AWD from the paper "Adaptive wavelet distillation from neural networks through interpretations" (Ha et al. NeurIPS, 2021).
Abstract: Recent deep-learning models have achieved impressive prediction performance, but often sacrifice interpretability and computational efficiency. Interpretability is crucial in many disciplines, such as science and medicine, where models must be carefully vetted or where interpretation is the goal itself. Moreover, interpretable models are concise and often yield computational efficiency. Here, we propose adaptive wavelet distillation (AWD), a method which aims to distill information from a trained neural network into a wavelet transform. Specifically, AWD penalizes feature attributions of a neural network in the wavelet domain to learn an effective multi-resolution wavelet transform. The resulting model is highly predictive, concise, computationally efficient, and has properties (such as a multi-scale structure) which make it easy to interpret. In close collaboration with domain experts, we showcase how AWD addresses challenges in two real-world settings: cosmological parameter inference and molecular-partner prediction. In both cases, AWD yields a scientifically interpretable and concise model which gives predictive performance better than state-of-the-art neural networks. Moreover, AWD identifies predictive features that are scientifically meaningful in the context of respective domains.
Also provides an implementation for "Learning Sparse Wavelet Representations" (Recoskie & Mann, 2018)
Abstract: In this work we propose a method for learning wavelet filters directly from data. We accomplish this by framing the discrete wavelet transform as a modified convolutional neural network. We introduce an autoencoder wavelet transform network that is trained using gradient descent. We show that the model is capable of learning structured wavelet filters from synthetic and real data. The learned wavelets are shown to be similar to traditional wavelets that are derived using Fourier methods. Our method is simple to implement and easily incorporated into neural network architectures. A major advantage to our model is that we can learn from raw audio data.

Related work

  • TRIM (ICLR 2020 workshop pdf, github) - using simple reparameterizations, allows for calculating disentangled importances to transformations of the input (e.g. assigning importances to different frequencies)
  • ACD (ICLR 2019 pdf, github) - extends CD to CNNs / arbitrary DNNs, and aggregates explanations into a hierarchy
  • CDEP (ICML 2020 pdf, github) - penalizes CD / ACD scores during training to make models generalize better
  • DAC (arXiv 2019 pdf, github) - finds disentangled interpretations for random forests
  • PDR framework (PNAS 2019 pdf) - an overarching framewwork for guiding and framing interpretable machine learning

If this package is useful for you, please cite the following!

@article{ha2021adaptive,
  title={Adaptive wavelet distillation from neural networks through interpretations},
  author={Ha, Wooseok and Singh, Chandan and Lanusse, Francois and Song, Eli and Dang, Song and He, Kangmin and Upadhyayula, Srigokul and Yu, Bin},
  journal={arXiv preprint arXiv:2107.09145},
  year={2021}
}
Owner
Yu Group
Bin Yu Group at UC Berkeley
Yu Group
AirLoop: Lifelong Loop Closure Detection

AirLoop This repo contains the source code for paper: Dasong Gao, Chen Wang, Sebastian Scherer. "AirLoop: Lifelong Loop Closure Detection." arXiv prep

Chen Wang 53 Jan 03, 2023
Code for CVPR2021 paper 'Where and What? Examining Interpretable Disentangled Representations'.

PS-SC GAN This repository contains the main code for training a PS-SC GAN (a GAN implemented with the Perceptual Simplicity and Spatial Constriction c

Xinqi/Steven Zhu 40 Dec 16, 2022
Expressive Power of Invariant and Equivaraint Graph Neural Networks (ICLR 2021)

Expressive Power of Invariant and Equivaraint Graph Neural Networks In this repository, we show how to use powerful GNN (2-FGNN) to solve a graph alig

Marc Lelarge 36 Dec 12, 2022
Simply enable or disable your Nvidia dGPU

EnvyControl (WIP) Simply enable or disable your Nvidia dGPU Usage First clone this repo and install envycontrol with sudo pip install . CLI Turn off y

Victor Bayas 292 Jan 03, 2023
Code for KDD'20 "An Efficient Neighborhood-based Interaction Model for Recommendation on Heterogeneous Graph"

Heterogeneous INteract and aggreGatE (GraphHINGE) This is a pytorch implementation of GraphHINGE model. This is the experiment code in the following w

Jinjiarui 69 Nov 24, 2022
git《FSCE: Few-Shot Object Detection via Contrastive Proposal Encoding》(CVPR 2021) GitHub: [fig8]

FSCE: Few-Shot Object Detection via Contrastive Proposal Encoding (CVPR 2021) This repo contains the implementation of our state-of-the-art fewshot ob

233 Dec 29, 2022
SmoothGrad implementation in PyTorch

SmoothGrad implementation in PyTorch PyTorch implementation of SmoothGrad: removing noise by adding noise. Vanilla Gradients SmoothGrad Guided backpro

SSKH 143 Jan 05, 2023
Detecting Potentially Harmful and Protective Suicide-related Content on Twitter

TwitterSuicideML Scripts for reproducing the Machine Learning analysis of the paper: Detecting Potentially Harmful and Protective Suicide-related Cont

3 Oct 17, 2022
Dynamic Neural Representational Decoders for High-Resolution Semantic Segmentation

Dynamic Neural Representational Decoders for High-Resolution Semantic Segmentation Requirements This repository needs mmsegmentation Training To train

20 May 28, 2022
The source codes for TME-BNA: Temporal Motif-Preserving Network Embedding with Bicomponent Neighbor Aggregation.

TME The source codes for TME-BNA: Temporal Motif-Preserving Network Embedding with Bicomponent Neighbor Aggregation. Our implementation is based on TG

2 Feb 10, 2022
Seeing All the Angles: Learning Multiview Manipulation Policies for Contact-Rich Tasks from Demonstrations

Seeing All the Angles: Learning Multiview Manipulation Policies for Contact-Rich Tasks from Demonstrations Trevor Ablett, Daniel (Yifan) Zhai, Jonatha

STARS Laboratory 3 Feb 01, 2022
Informal Persian Universal Dependency Treebank

Informal Persian Universal Dependency Treebank (iPerUDT) Informal Persian Universal Dependency Treebank, consisting of 3000 sentences and 54,904 token

Roya Kabiri 0 Jan 05, 2022
Code for Robust Contrastive Learning against Noisy Views

Robust Contrastive Learning against Noisy Views This repository provides a PyTorch implementation of the Robust InfoNCE loss proposed in paper Robust

Ching-Yao Chuang 53 Jan 08, 2023
A 3D Dense mapping backend library of SLAM based on taichi-Lang designed for the aerial swarm.

TaichiSLAM This project is a 3D Dense mapping backend library of SLAM based Taichi-Lang, designed for the aerial swarm. Intro Taichi is an efficient d

XuHao 230 Dec 19, 2022
PyTorch code for the paper: FeatMatch: Feature-Based Augmentation for Semi-Supervised Learning

FeatMatch: Feature-Based Augmentation for Semi-Supervised Learning This is the PyTorch implementation of our paper: FeatMatch: Feature-Based Augmentat

43 Nov 19, 2022
Action Segmentation Evaluation

Reference Action Segmentation Evaluation Code This repository contains the reference code for action segmentation evaluation. If you have a bug-fix/im

5 May 22, 2022
Official PyTorch implementation of Synergies Between Affordance and Geometry: 6-DoF Grasp Detection via Implicit Representations

Synergies Between Affordance and Geometry: 6-DoF Grasp Detection via Implicit Representations Zhenyu Jiang, Yifeng Zhu, Maxwell Svetlik, Kuan Fang, Yu

UT-Austin Robot Perception and Learning Lab 63 Jan 03, 2023
Pytorch implementation of "Neural Wireframe Renderer: Learning Wireframe to Image Translations"

Neural Wireframe Renderer: Learning Wireframe to Image Translations Pytorch implementation of ideas from the paper Neural Wireframe Renderer: Learning

Yuan Xue 7 Nov 14, 2022
classify fashion-mnist dataset with pytorch

Fashion-Mnist Classifier with PyTorch Inference 1- clone this repository: git clone https://github.com/Jhamed7/Fashion-Mnist-Classifier.git 2- Instal

1 Jan 14, 2022
In this work, we will implement some basic but important algorithm of machine learning step by step.

WoRkS continued English 中文 Français Probability Density Estimation-Non-Parametric Methods(概率密度估计-非参数方法) 1. Kernel / k-Nearest Neighborhood Density Est

liziyu0104 1 Dec 30, 2021