Full automated data pipeline using docker images

Overview

Create postgres tables from CSV files

This first section is only relate to creating tables from CSV files using postgres container alone. Just one of my experiments. If you interest, you can just follow these steps (only if your working environment support bash):

sh scripts/prep.sh

The prep.sh will handle everything for you by doing follwing:

# Start postgres db container
docker-compose -f postgres.yaml up -d
# Sleep to make sure the container is fully up running
sleep 3 

# I have problem with mouting csv files via docker compose, so here we go
# Copy csv and setup.sql to create required tables
docker cp ./csv/ my_postgres:
docker cp ./scripts/setup.sql my_postgres:setup.sql

# Execute the script in postgres db
docker exec -it my_postgres psql -p5432 --dbname=postgres --username=postgres --file=setup.sql 

# Shutdown the container
docker-compose -f postgres.yaml down --remove-orphans

I had problem with mount volumn that I can't mount the files under csv and scripts folders. Which still can be improved with a proper mount. But let's skip it for now to save time.

Initial Setup/Start Airflow container

This section will use a separate docker-compose.yaml than the above test. It will be relate due to the fact that we want to use airflow to schedule the tasks above (create table and load data). To do so, do the following. First prepare folders. You can call a new folder specifically for this if you want.

# (optional) mkdir airflow && cd airflow
mkdir ./dags ./logs ./plugins

Next we need the airflow docker-compose.yaml in our airflow directory

curl -O https://airflow.apache.org/docs/apache-airflow/stable/docker-compose.yaml

Next make sure we will have a proper permission to initial Airflow

.env ">
echo -e "AIRFLOW_UID=$(id -u)\nAIRFLOW_GID=0" > .env

Then we must initial Airflow instance

docker-compose up airflow-init

Wait until the initial finished then (you can use -d to detach if you want)

docker-compose up

Now you will be able to connect to Airflow GUI via http://localhost:8080/

Create Airflow DAG task

First thing, you need to setup connection for postgres database. Go to tab Admin > Connection > +, wow you have to fill details of the connection:

Connection Id: postgres_default
Connection Type: 'Postgres'
Host: 
   
    
Schema: postgres (default)
Login: 
    
     
Password: 
     
      
Port: 
      

      
     
    
   

Click "Test" button to check your connection then save. Now click at the Airflow icon to return to home page. You should see task name "create_postgres_tables". Try to run by clicking start button select "Trigger DAG".

You might also like...
In this project, ETL pipeline is build on data warehouse hosted on AWS Redshift.

ETL Pipeline for AWS Project Description In this project, ETL pipeline is build on data warehouse hosted on AWS Redshift. The data is loaded from S3 t

Demonstrate a Dataflow pipeline that saves data from an API into BigQuery table

Overview dataflow-mvp provides a basic example pipeline that pulls data from an API and writes it to a BigQuery table using GCP's Dataflow (i.e., Apac

X-news - Pipeline data use scrapy, kafka, spark streaming, spark ML and elasticsearch, Kibana

X-news - Pipeline data use scrapy, kafka, spark streaming, spark ML and elasticsearch, Kibana

An ETL Pipeline of a large data set from a fictitious music streaming service named Sparkify.

An ETL Pipeline of a large data set from a fictitious music streaming service named Sparkify. The ETL process flows from AWS's S3 into staging tables in AWS Redshift.

Mortgage-loan-prediction - Show how to perform advanced Analytics and Machine Learning in Python using a full complement of PyData utilities

Mortgage-loan-prediction - Show how to perform advanced Analytics and Machine Learning in Python using a full complement of PyData utilities. This is aimed at those looking to get into the field of Data Science or those who are already in the field and looking to solve a real-world project with python.

Flenser is a simple, minimal, automated exploratory data analysis tool.

Flenser Have you ever been handed a dataset you've never seen before? Flenser is a simple, minimal, automated exploratory data analysis tool. It runs

Lale is a Python library for semi-automated data science.
Lale is a Python library for semi-automated data science.

Lale is a Python library for semi-automated data science. Lale makes it easy to automatically select algorithms and tune hyperparameters of pipelines that are compatible with scikit-learn, in a type-safe fashion.

Data Competition: automated systems that can detect whether people are not wearing masks or are wearing masks incorrectly
Data Competition: automated systems that can detect whether people are not wearing masks or are wearing masks incorrectly

Table of contents Introduction Dataset Model & Metrics How to Run Quickstart Install Training Evaluation Detection DATA COMPETITION The COVID-19 pande

Pipeline and Dataset helpers for complex algorithm evaluation.

tpcp - Tiny Pipelines for Complex Problems A generic way to build object-oriented datasets and algorithm pipelines and tools to evaluate them pip inst

Releases(airflow-postgres-dag)
Pipeline to convert a haploid assembly into diploid

HapDup (haplotype duplicator) is a pipeline to convert a haploid long read assembly into a dual diploid assembly. The reconstructed haplotypes

Mikhail Kolmogorov 50 Jan 05, 2023
Py-price-monitoring - A Python price monitor

A Python price monitor This project was focused on Brazil, so the monitoring is

Samuel 1 Jan 04, 2022
OpenDrift is a software for modeling the trajectories and fate of objects or substances drifting in the ocean, or even in the atmosphere.

opendrift OpenDrift is a software for modeling the trajectories and fate of objects or substances drifting in the ocean, or even in the atmosphere. Do

OpenDrift 167 Dec 13, 2022
A Python adaption of Augur to prioritize cell types in perturbation analysis.

A Python adaption of Augur to prioritize cell types in perturbation analysis.

Theis Lab 2 Mar 29, 2022
A set of tools to analyse the output from TraDIS analyses

QuaTradis (Quadram TraDis) A set of tools to analyse the output from TraDIS analyses Contents Introduction Installation Required dependencies Bioconda

Quadram Institute Bioscience 2 Feb 16, 2022
📊 Python Flask game that consolidates data from Nasdaq, allowing the user to practice buying and selling stocks.

Web Trader Web Trader is a trading website that consolidates data from Nasdaq, allowing the user to search up the ticker symbol and price of any stock

Paulina Khew 21 Aug 30, 2022
PyChemia, Python Framework for Materials Discovery and Design

PyChemia, Python Framework for Materials Discovery and Design PyChemia is an open-source Python Library for materials structural search. The purpose o

Materials Discovery Group 61 Oct 02, 2022
bigdata_analyse 大数据分析项目

bigdata_analyse 大数据分析项目 wish 采用不同的技术栈,通过对不同行业的数据集进行分析,期望达到以下目标: 了解不同领域的业务分析指标 深化数据处理、数据分析、数据可视化能力 增加大数据批处理、流处理的实践经验 增加数据挖掘的实践经验

Way 2.4k Dec 30, 2022
Investigating EV charging data

Investigating EV charging data Introduction: Got an opportunity to work with a home monitoring technology company over the last 6 months whose goal wa

Yash 2 Apr 07, 2022
statDistros is a Python library for dealing with various statistical distributions

StatisticalDistributions statDistros statDistros is a Python library for dealing with various statistical distributions. Now it provides various stati

1 Oct 03, 2021
Approximate Nearest Neighbor Search for Sparse Data in Python!

Approximate Nearest Neighbor Search for Sparse Data in Python! This library is well suited to finding nearest neighbors in sparse, high dimensional spaces (like text documents).

Meta Research 906 Jan 01, 2023
Randomisation-based inference in Python based on data resampling and permutation.

Randomisation-based inference in Python based on data resampling and permutation.

67 Dec 27, 2022
Evidence enables analysts to deliver a polished business intelligence system using SQL and markdown.

Evidence enables analysts to deliver a polished business intelligence system using SQL and markdown

915 Dec 26, 2022
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis. You write a high level configuration file specifying your in

Blue Collar Bioinformatics 917 Jan 03, 2023
Tokyo 2020 Paralympics, Analytics

Tokyo 2020 Paralympics, Analytics Thanks for checking out my app! It was built entirely using matplotlib and Tokyo 2020 Paralympics data. This applica

Petro Ivaniuk 1 Nov 18, 2021
Repositori untuk menyimpan material Long Course STMKGxHMGI tentang Geophysical Python for Seismic Data Analysis

Long Course "Geophysical Python for Seismic Data Analysis" Instruktur: Dr.rer.nat. Wiwit Suryanto, M.Si Dipersiapkan oleh: Anang Sahroni Waktu: Sesi 1

Anang Sahroni 0 Dec 04, 2021
Describing statistical models in Python using symbolic formulas

Patsy is a Python library for describing statistical models (especially linear models, or models that have a linear component) and building design mat

Python for Data 866 Dec 16, 2022
Option Pricing Calculator using the Binomial Pricing Method (No Libraries Required)

Binomial Option Pricing Calculator Option Pricing Calculator using the Binomial Pricing Method (No Libraries Required) Background A derivative is a fi

sammuhrai 1 Nov 29, 2021
Hidden Markov Models in Python, with scikit-learn like API

hmmlearn hmmlearn is a set of algorithms for unsupervised learning and inference of Hidden Markov Models. For supervised learning learning of HMMs and

2.7k Jan 03, 2023
A computer algebra system written in pure Python

SymPy See the AUTHORS file for the list of authors. And many more people helped on the SymPy mailing list, reported bugs, helped organize SymPy's part

SymPy 9.9k Dec 31, 2022