ISBI 2022: Cross-level Contrastive Learning and Consistency Constraint for Semi-supervised Medical Image.

Related tags

Deep LearningCLCC-semi
Overview

Cross-level Contrastive Learning and Consistency Constraint for Semi-supervised Medical Image

Introduction

This repository contains the PyTorch implementation of:

Cross-level Contrastive Learning and Consistency Constraint for Semi-supervised Medical Image, ISBI 2022.

test1

Requirements

  • torch
  • torchvision
  • tqdm
  • albumentations
  • tensorboardX
  • cv2
  • numpy

Usage

1.Folder Structure

We except the data folder has these structures:

root/    
|-- data/
    |-- ISIC/
    |   |-- TrainDataset/
    |   |   |-- images/
    |   |   |   |-- ISIC_0000001.jpg 
    |   |   |   |-- ISIC_0000002.jpg 
    |   |   |   ...
    |   |   |-- masks/
    |   |       |-- ISIC_0000001.jpg 
    |   |       |-- ISIC_0000002.jpg 
    |   |       ...
    |   |-- ValidationDataset/
    |   |   |-- images/
    |   |   |   |-- ISIC_0000003.jpg 
    |   |   |   |-- ISIC_0000004.jpg 
    |   |   |   ...
    |   |   |-- masks/
    |   |       |-- ISIC_0000003.jpg 
    |   |       |-- ISIC_0000004.jpg 
    |   |       ...
    |   |-- TestDataset/
    |       |-- images/
    |       |   |-- ISIC_0000005.jpg 
    |       |   |-- ISIC_0000006.jpg 
    |       |   ...
    |       |-- masks/
    |           |-- ISIC_0000005.jpg 
    |           |-- ISIC_0000006.jpg 
    |           ...
    |-- Kvasir-SEG/
        |-- TrainDataset/
        |   |-- images/
        |   |   ...
        |   |-- masks/
        |       ...
        |-- ValidationDataset/
        |   |-- images/
        |   |   ...
        |   |-- masks/
        |       ...
        |-- TestDataset/
            |-- images/
            |   ...
            |-- masks/
                ...

2. Training

python main.py --config ./expconfigs/XXX.yaml

3. Testing

python main.py --config ./expconfigs/XXX.yaml --test

Citation

If you feel this work is helpful, please cite our paper

comming soon
Owner
GitHub Repository
This is a repository for a semantic segmentation inference API using the OpenVINO toolkit

BMW-IntelOpenVINO-Segmentation-Inference-API This is a repository for a semantic segmentation inference API using the OpenVINO toolkit. It's supported

BMW TechOffice MUNICH 34 Nov 24, 2022
REGTR: End-to-end Point Cloud Correspondences with Transformers

REGTR: End-to-end Point Cloud Correspondences with Transformers This repository contains the source code for REGTR. REGTR utilizes multiple transforme

Zi Jian Yew 108 Dec 17, 2022
Consensus Learning from Heterogeneous Objectives for One-Class Collaborative Filtering

Consensus Learning from Heterogeneous Objectives for One-Class Collaborative Filtering This repository provides the source code of "Consensus Learning

SeongKu-Kang 6 Apr 29, 2022
Quantized models with python

quantized-network download .pth files to qmodels/: googlenet : https://download.

adreamxcj 2 Dec 28, 2021
Implementation of Axial attention - attending to multi-dimensional data efficiently

Axial Attention Implementation of Axial attention in Pytorch. A simple but powerful technique to attend to multi-dimensional data efficiently. It has

Phil Wang 250 Dec 25, 2022
Code for "NeRS: Neural Reflectance Surfaces for Sparse-View 3D Reconstruction in the Wild," in NeurIPS 2021

Code for Neural Reflectance Surfaces (NeRS) [arXiv] [Project Page] [Colab Demo] [Bibtex] This repo contains the code for NeRS: Neural Reflectance Surf

Jason Y. Zhang 234 Dec 30, 2022
ShinRL: A Library for Evaluating RL Algorithms from Theoretical and Practical Perspectives

Status: Under development (expect bug fixes and huge updates) ShinRL: A Library for Evaluating RL Algorithms from Theoretical and Practical Perspectiv

37 Dec 28, 2022
Alias-Free Generative Adversarial Networks (StyleGAN3) Official PyTorch implementation

Alias-Free Generative Adversarial Networks (StyleGAN3) Official PyTorch implementation

NVIDIA Research Projects 4.8k Jan 09, 2023
PyTorch implementation of Off-policy Learning in Two-stage Recommender Systems

Off-Policy-2-Stage This repo provides a PyTorch implementation of the MovieLens experiments for the following paper: Off-policy Learning in Two-stage

Jiaqi Ma 25 Dec 12, 2022
Unofficial implementation of MLP-Mixer: An all-MLP Architecture for Vision

MLP-Mixer: An all-MLP Architecture for Vision This repo contains PyTorch implementation of MLP-Mixer: An all-MLP Architecture for Vision. Usage : impo

Rishikesh (ऋषिकेश) 175 Dec 23, 2022
PyTorch implementation of DeepDream algorithm

neural-dream This is a PyTorch implementation of DeepDream. The code is based on neural-style-pt. Here we DeepDream a photograph of the Golden Gate Br

121 Nov 05, 2022
ENet: A Deep Neural Network Architecture for Real-Time Semantic Segmentation.

ENet This work has been published in arXiv: ENet: A Deep Neural Network Architecture for Real-Time Semantic Segmentation. Packages: train contains too

e-Lab 344 Nov 21, 2022
ProMP: Proximal Meta-Policy Search

ProMP: Proximal Meta-Policy Search Implementations corresponding to ProMP (Rothfuss et al., 2018). Overall this repository consists of two branches: m

Jonas Rothfuss 212 Dec 20, 2022
Multi-label Co-regularization for Semi-supervised Facial Action Unit Recognition (NeurIPS 2019)

MLCR This is the source code for paper Multi-label Co-regularization for Semi-supervised Facial Action Unit Recognition. Xuesong Niu, Hu Han, Shiguang

Edson-Niu 60 Nov 29, 2022
OpenPose: Real-time multi-person keypoint detection library for body, face, hands, and foot estimation

Build Type Linux MacOS Windows Build Status OpenPose has represented the first real-time multi-person system to jointly detect human body, hand, facia

25.7k Jan 09, 2023
How will electric vehicles affect traffic congestion and energy consumption: an integrated modelling approach

EV-charging-impact This repository contains the code that has been used for the Queue modelling for the paper "How will electric vehicles affect traff

7 Nov 30, 2022
Spatio-Temporal Entropy Model (STEM) for end-to-end leaned video compression.

Spatio-Temporal Entropy Model A Pytorch Reproduction of Spatio-Temporal Entropy Model (STEM) for end-to-end leaned video compression. More details can

16 Nov 28, 2022
repro_eval is a collection of measures to evaluate the reproducibility/replicability of system-oriented IR experiments

repro_eval repro_eval is a collection of measures to evaluate the reproducibility/replicability of system-oriented IR experiments. The measures were d

IR Group at Technische Hochschule Köln 9 May 25, 2022
Automatic Differentiation Multipole Moment Molecular Forcefield

Automatic Differentiation Multipole Moment Molecular Forcefield Performance notes On a single gpu, using waterbox_31ang.pdb example from MPIDplugin wh

4 Jan 07, 2022
A PyTorch re-implementation of Neural Radiance Fields

nerf-pytorch A PyTorch re-implementation Project | Video | Paper NeRF: Representing Scenes as Neural Radiance Fields for View Synthesis Ben Mildenhall

Krishna Murthy 709 Jan 09, 2023