Automated bug/error reporting for napari

Overview

napari-error-monitor

License PyPI Python Version CI codecov

Want to help out napari? Install this plugin!

This plugin will automatically send error reports to napari (via sentry.io) whenever an exception occurs while you are using napari.

The first time you run napari after installing this plugin an opt-in notification will appear (Be sure to click "yes", otherwise no reports will be collected or sent). You may opt back out at any time in napari's help menu.

Every effort is made to strip these reports of personally identifiable information. Here is an example exception event:

Example bug report
{
    'breadcrumbs': {
        'values': [
            {
                'category': 'subprocess',
                'data': {},
                'message': 'sw_vers -productVersion',
                'timestamp': '2022-02-02T01:30:00.216738Z',
                'type': 'subprocess'
            }
        ]
    },
    'contexts': {
        'runtime': {
            'build': '3.9.9 | packaged by conda-forge | (main, Dec 20 2021, 02:41:37) \n[Clang 11.1.0 ]',
            'name': 'CPython',
            'version': '3.9.9'
        }
    },
    'environment': 'macOS-10.15.7-x86_64-i386-64bit',
    'event_id': '02dd8ddd3a4b4743af3d7d7a09949df4',
    'exception': {
        'values': [
            {
                'mechanism': None,
                'module': None,
                'stacktrace': {
                    'frames': [
                        {
                            'context_line': '                x = 1 / 0',
                            'filename': 'napari_error_monitor/_util.py',
                            'function': 'get_sample_event',
                            'in_app': True,
                            'lineno': 130,
                            'module': 'napari_error_monitor._util',
                            'post_context': [
                                '            except Exception:',
                                '                with sentry_sdk.push_scope() as scope:',
                                '                    for k, v in _get_tags().items():',
                                '                        scope.set_tag(k, v)',
                                '                    del v, k, scope'
                            ],
                            'pre_context': [
                                "            # remove locals that wouldn't really be there",
                                '            del settings, _trans, kwargs, client, EVENT',
                                '            try:',
                                '                some_variable = 1',
                                '                another_variable = "my_string"'
                            ]
                        }
                    ]
                },
                'type': 'ZeroDivisionError',
                'value': 'division by zero'
            }
        ]
    },
    'extra': {'sys.argv': ['napari']},
    'level': 'error',
    'modules': {
        'aicsimageio': '4.5.2',
        'aicspylibczi': '3.0.4',
        'aiohttp': '3.8.1',
        'aiosignal': '1.2.0',
        'alabaster': '0.7.12',
        'anyio': '3.5.0',
        'appdirs': '1.4.4',
        'appnope': '0.1.2',
        'argon2-cffi': '21.3.0',
        'argon2-cffi-bindings': '21.2.0',
        'arrow': '1.2.1',
        'asciitree': '0.3.3',
        'asttokens': '2.0.5',
        'async-timeout': '4.0.2',
        'atomium': '1.0.11',
        'attrs': '21.4.0',
        'autopep8': '1.6.0',
        'babel': '2.9.1',
        'backcall': '0.2.0',
        'bcrypt': '3.2.0',
        'beautifulsoup4': '4.10.0',
        'binaryornot': '0.4.4',
        'black': '20.8b1',
        'bleach': '4.1.0',
        'bracex': '2.2.1',
        'build': '0.7.0',
        'cachey': '0.2.1',
        'cellpose': '0.6.5',
        'certifi': '2021.10.8',
        'cffi': '1.15.0',
        'cfgv': '3.3.1',
        'chardet': '4.0.0',
        'charset-normalizer': '2.0.10',
        'check-manifest': '0.47',
        'click': '7.1.2',
        'click-option-group': '0.5.3',
        'cloudpickle': '2.0.0',
        'colorama': '0.4.4',
        'commonmark': '0.9.1',
        'cookiecutter': '1.7.3',
        'coverage': '6.2',
        'cryptography': '36.0.1',
        'cycler': '0.11.0',
        'dask': '2022.1.0',
        'debugpy': '1.5.1',
        'decorator': '5.1.1',
        'defusedxml': '0.7.1',
        'distlib': '0.3.4',
        'dnspython': '2.2.0',
        'docstring-parser': '0.13',
        'docutils': '0.16',
        'elementpath': '2.4.0',
        'email-validator': '1.1.3',
        'entrypoints': '0.3',
        'executing': '0.8.2',
        'fancycompleter': '0.9.1',
        'fasteners': '0.17.2',
        'fastremap': '1.12.2',
        'filelock': '3.4.2',
        'flake8': '3.8.4',
        'fonttools': '4.28.5',
        'freetype-py': '2.2.0',
        'frozenlist': '1.3.0',
        'fsspec': '2022.1.0',
        'furo': '2022.1.2',
        'gitdb': '4.0.9',
        'gitpython': '3.1.26',
        'greenlet': '1.1.2',
        'heapdict': '1.0.1',
        'hsluv': '5.0.2',
        'hypothesis': '6.35.1',
        'identify': '2.4.4',
        'idna': '3.3',
        'imagecodecs': '2021.11.20',
        'imageio': '2.10.5',
        'imageio-ffmpeg': '0.4.5',
        'imagesize': '1.3.0',
        'importlib-metadata': '4.10.1',
        'iniconfig': '1.1.1',
        'install': '1.3.5',
        'intervaltree': '3.1.0',
        'ipykernel': '6.7.0',
        'ipython': '8.0.0',
        'ipython-genutils': '0.2.0',
        'ipywidgets': '7.6.5',
        'jedi': '0.18.1',
        'jinja2': '3.0.3',
        'jinja2-time': '0.2.0',
        'jsonschema': '3.2.0',
        'jupyter': '1.0.0',
        'jupyter-book': '0.12.1',
        'jupyter-cache': '0.4.3',
        'jupyter-client': '7.1.1',
        'jupyter-console': '6.4.0',
        'jupyter-core': '4.9.1',
        'jupyter-server': '1.13.3',
        'jupyter-server-mathjax': '0.2.3',
        'jupyter-sphinx': '0.3.2',
        'jupyterlab-pygments': '0.1.2',
        'jupyterlab-widgets': '1.0.2',
        'jupytext': '1.11.5',
        'kiwisolver': '1.3.2',
        'latexcodec': '2.0.1',
        'linkify-it-py': '1.0.3',
        'llvmlite': '0.38.0',
        'locket': '0.2.1',
        'loguru': '0.5.3',
        'lxml': '4.7.1',
        'magicgui': '0.3.5.dev18+g78d1687',
        'markdown-it-py': '1.1.0',
        'markupsafe': '2.0.1',
        'matplotlib': '3.5.1',
        'matplotlib-inline': '0.1.3',
        'mccabe': '0.6.1',
        'mdit-py-plugins': '0.2.8',
        'meshzoo': '0.9.2',
        'mistune': '0.8.4',
        'mrc': '0.2.0',
        'msgpack': '1.0.3',
        'multidict': '5.2.0',
        'mypy': '0.931',
        'mypy-extensions': '0.4.3',
        'myst-nb': '0.13.1',
        'myst-parser': '0.15.2',
        'napari': '0.4.14rc1.dev4+gcdf58d44b',
        'napari-aicsimageio': '0.4.1',
        'napari-console': '0.0.4',
        'napari-dv': '0.2.7.dev0+g54e1691.d20220128',
        'napari-error-monitor': '0.1.dev1+g1b388f2.d20220201',
        'napari-hello': '0.0.1',
        'napari-math': '0.0.1a0',
        'napari-micromanager': '0.0.1rc6.dev14+g5149788.d20220128',
        'napari-molecule-reader': '0.1.2.dev1+gc2ec2de',
        'napari-plugin-engine': '0.2.0',
        'napari-pyclesperanto-assistant': '0.12.0',
        'napari-skimage-regionprops': '0.2.9',
        'napari-svg': '0.1.6',
        'napari-time-slicer': '0.4.2',
        'napari-workflows': '0.1.2',
        'natsort': '8.0.2',
        'nbclient': '0.5.10',
        'nbconvert': '6.4.0',
        'nbdime': '3.1.1',
        'nbformat': '5.1.3',
        'nd2': '0.1.4',
        'nest-asyncio': '1.5.4',
        'networkx': '2.6.3',
        'nodeenv': '1.6.0',
        'notebook': '6.4.7',
        'npe2': '0.1.1',
        'numba': '0.55.0',
        'numcodecs': '0.9.1',
        'numpy': '1.20.3',
        'numpydoc': '1.1.0',
        'ome-types': '0.2.10',
        'opencv-python-headless': '4.5.5.62',
        'packaging': '21.3',
        'pandas': '1.3.5',
        'pandocfilters': '1.5.0',
        'paramiko': '2.9.2',
        'parso': '0.8.3',
        'partd': '1.2.0',
        'pathspec': '0.9.0',
        'pdbpp': '0.10.3',
        'peewee': '3.14.8',
        'pep517': '0.12.0',
        'pexpect': '4.8.0',
        'pickleshare': '0.7.5',
        'pillow': '8.4.0',
        'pint': '0.18',
        'pip': '21.3.1',
        'platformdirs': '2.4.1',
        'pluggy': '1.0.0',
        'pooch': '1.5.2',
        'poyo': '0.5.0',
        'pre-commit': '2.16.0',
        'prometheus-client': '0.12.0',
        'prompt-toolkit': '3.0.24',
        'psutil': '5.9.0',
        'psygnal': '0.2.0',
        'ptyprocess': '0.7.0',
        'pure-eval': '0.2.1',
        'py': '1.11.0',
        'pybtex': '0.24.0',
        'pybtex-docutils': '1.0.1',
        'pyclesperanto-prototype': '0.12.0',
        'pycodestyle': '2.8.0',
        'pycparser': '2.21',
        'pydantic': '1.9.0',
        'pydata-sphinx-theme': '0.7.2',
        'pyflakes': '2.2.0',
        'pygments': '2.11.2',
        'pymmcore': '10.1.1.70.5',
        'pymmcore-plus': '0.1.8',
        'pynacl': '1.5.0',
        'pyopencl': '2021.2.13',
        'pyopengl': '3.1.5',
        'pyparsing': '3.0.6',
        'pyperclip': '1.8.2',
        'pyrepl': '0.9.0',
        'pyro5': '5.13.1',
        'pyrsistent': '0.18.1',
        'pyside2': '5.15.2.1',
        'pytest': '6.2.5',
        'pytest-cookies': '0.6.1',
        'pytest-cov': '3.0.0',
        'pytest-faulthandler': '2.0.1',
        'pytest-order': '1.0.1',
        'pytest-qt': '4.0.2',
        'python-dateutil': '2.8.2',
        'python-dotenv': '0.19.2',
        'python-slugify': '5.0.2',
        'pytomlpp': '1.0.10',
        'pytools': '2021.2.9',
        'pytz': '2021.3',
        'pywavelets': '1.2.0',
        'pyyaml': '6.0',
        'pyzmq': '22.3.0',
        'qtconsole': '5.2.2',
        'qtpy': '2.0.0',
        'regex': '2021.11.10',
        'requests': '2.27.1',
        'rich': '11.0.0',
        'rmsd': '1.4',
        'ruamel.yaml': '0.17.20',
        'ruamel.yaml.clib': '0.2.6',
        'scikit-image': '0.19.1',
        'scipy': '1.7.3',
        'semgrep': '0.78.0',
        'send2trash': '1.8.0',
        'sentry-sdk': '1.5.4',
        'serpent': '1.40',
        'setuptools': '60.5.0',
        'shiboken2': '5.15.2.1',
        'six': '1.16.0',
        'smmap': '5.0.0',
        'sniffio': '1.2.0',
        'snowballstemmer': '2.2.0',
        'sortedcontainers': '2.4.0',
        'soupsieve': '2.3.1',
        'sourcery-cli': '0.10.0',
        'sphinx': '4.4.0',
        'sphinx-autodoc-typehints': '1.12.0',
        'sphinx-book-theme': '0.1.10',
        'sphinx-comments': '0.0.3',
        'sphinx-copybutton': '0.4.0',
        'sphinx-external-toc': '0.2.3',
        'sphinx-jupyterbook-latex': '0.4.6',
        'sphinx-multitoc-numbering': '0.1.3',
        'sphinx-panels': '0.6.0',
        'sphinx-tabs': '3.2.0',
        'sphinx-thebe': '0.0.10',
        'sphinx-togglebutton': '0.2.3',
        'sphinxcontrib-applehelp': '1.0.2',
        'sphinxcontrib-bibtex': '2.2.1',
        'sphinxcontrib-devhelp': '1.0.2',
        'sphinxcontrib-htmlhelp': '2.0.0',
        'sphinxcontrib-jsmath': '1.0.1',
        'sphinxcontrib-qthelp': '1.0.3',
        'sphinxcontrib-serializinghtml': '1.1.5',
        'sqlalchemy': '1.4.29',
        'stack-data': '0.1.4',
        'superqt': '0.2.5.post2.dev7+ga49bcd7',
        'tensorstore': '0.1.16',
        'terminado': '0.12.1',
        'testpath': '0.5.0',
        'text-unidecode': '1.3',
        'tifffile': '2021.11.2',
        'toml': '0.10.2',
        'tomli': '2.0.0',
        'toolz': '0.11.2',
        'torch': '1.10.1',
        'tornado': '6.1',
        'tox': '3.24.5',
        'tox-conda': '0.9.1',
        'tqdm': '4.62.3',
        'traitlets': '5.1.1',
        'transforms3d': '0.3.1',
        'transitions': '0.8.10',
        'typed-ast': '1.5.1',
        'typer': '0.4.0',
        'typing-extensions': '4.0.1',
        'uc-micro-py': '1.0.1',
        'urllib3': '1.26.8',
        'useq-schema': '0.1.1.dev13+g01d1b46.d20220120',
        'valerius': '0.2.0',
        'virtualenv': '20.13.0',
        'vispy': '0.9.4',
        'watchdog': '2.1.6',
        'wcmatch': '8.3',
        'wcwidth': '0.2.5',
        'webencodings': '0.5.1',
        'websocket-client': '1.2.3',
        'wheel': '0.37.1',
        'widgetsnbextension': '3.5.2',
        'wmctrl': '0.4',
        'wrapt': '1.13.3',
        'wurlitzer': '3.0.2',
        'xarray': '0.20.2',
        'xmlschema': '1.9.2',
        'yarl': '1.7.2',
        'zarr': '2.10.3',
        'zipp': '3.7.0'
    },
    'platform': 'python',
    'release': '0.4.14rc1.dev4+gcdf58d44b',
    'sdk': {
        'integrations': [
            'aiohttp',
            'argv',
            'atexit',
            'dedupe',
            'excepthook',
            'logging',
            'modules',
            'sqlalchemy',
            'stdlib',
            'threading',
            'tornado'
        ],
        'name': 'sentry.python',
        'packages': [{'name': 'pypi:sentry-sdk', 'version': '1.5.4'}],
        'version': '1.5.4'
    },
    'server_name': '',
    'tags': {
        'platform.name': 'MacOS 10.15.7',
        'platform.system': 'Darwin',
        'qtpy.API_NAME': 'PySide2',
        'qtpy.QT_VERSION': '5.15.2'
    },
    'timestamp': '2022-02-02T01:30:00.229122Z'
}

note: in the opt-in dialog, there is a checkbox labeled "include local variables", checking this will include the value of variables in the local scope when an exception occurs. While these can be very useful when interpreting a bug report, they may occasionally include local file path strings. If that concerns you, please leave this box unchecked

Install

pip install napari-error-monitor

Thank you!!

Owner
Talley Lambert
Microscopist at Harvard Medical School
Talley Lambert
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