Napari 3D Ortho Viewer - an ortho viewer for napari for 3D images

Overview

napari-3d-ortho-viewer

License PyPI Python Version tests codecov napari hub

Napari 3D Ortho Viewer - an ortho viewer for napari for 3D images


This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

This plugin is heavily inspired by ortho-view-napari.

Check out this post on image.sc (https://forum.image.sc/t/napari-visualization-in-3-planes/57768) for more infos about multiview support in napari.

This viewer has some additional features:

  • double click to jump to specific position in all slices
  • additional 3d view of 3d stack with lines or planes indicating current position

Installation

You can install napari-3d-ortho-viewer via pip:

pip install napari-3d-ortho-viewer

To install latest development version :

pip install git+https://github.com/gatoniel/napari-3d-ortho-viewer.git

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the MIT license, "napari-3d-ortho-viewer" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

Owner
niklas netter
I started studies in physics at Philipps University Marburg in April 2016. Currently I am working at Drescher Lab in the field of image analysis and biophysics.
niklas netter
A QR Code encode and decode python module

A QR Code encode and decode python module

Fayas Noushad 4 Feb 10, 2022
The friendly PIL fork (Python Imaging Library)

Pillow Python Imaging Library (Fork) Pillow is the friendly PIL fork by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lund

Pillow 10.4k Dec 31, 2022
This tool allows the user to convert a 16 by 16 image into a list with numbers representing an object/character.

Room Formatter This tool allows the user to convert a 16 by 16 image into a list with numbers representing an object/character. There is cur

Thomas Landstra 1 Nov 13, 2021
EmbedToolV2 - 2.0 Version of DraKenCodeZ/ImageEmbedTool

EmbedToolV2 - 2.0 Version of DraKenCodeZ/ImageEmbedTool

DraKenCodeZ 1 Dec 07, 2021
Depix is a tool for recovering passwords from pixelized screenshots.

This implementation works on pixelized images that were created with a linear box filter. In this article I cover background information on pixelization and similar research.

23.1k Jan 04, 2023
A simple programme for converting url into a qr code (.png file)

QrTk A simple lightweight programme for converting url into a qr code (.png file) Pre-Requisites Before installing the programme , you need to run the

Juss Patel 4 Nov 08, 2021
Detecting haze image with hazer.

hazer-py Detecting haze image with hazer. What is hazer Hazer is a lib for getting "haze degree". This repository is python version of hazer: https://

Joey777210 2 Dec 27, 2021
Visage Differentiation is a GUI application for outlining and labeling the visages in an image.

Visage Differentiation Visage Differentiation is a GUI application for outlining and labeling the visages in an image. The main functionality is provi

Grant Randa 0 Jan 13, 2022
Script that organizes the Google Takeout archive into one big chronological folder

Script that organizes the Google Takeout archive into one big chronological folder

Mateusz Soszyński 1.6k Jan 09, 2023
Tool to create a Phunk image with a custom background

Create Phunk image Tool to create a Phunk image with a custom background Installation Clone the repo git clone https://github.com/albanow/etherscan_sa

Albano Pena Torres 6 Mar 31, 2022
Ascify-Art - An easy to use, GUI based and user-friendly colored ASCII art generator from images!

Ascify-Art This is a python based colored ASCII art generator for free! How to Install? You can download and use the python version if you want, modul

Akash Bora 14 Dec 31, 2022
A Toolbox for Image Feature Matching and Evaluations

This is a toolbox repository to help evaluate various methods that perform image matching from a pair of images.

Qunjie Zhou 342 Dec 29, 2022
Png-to-stl - Converts PNG and text to SVG, and then extrudes that based on parameters

have ansible installed locally run ansible-playbook setup_application.yml this sets up directories, installs system packages, and sets up python envir

1 Jan 03, 2022
🛹 Turn an SVG into an STL for stencil creation purposes

svg2stl This repository provides a script which takes as input an SVG such as this one: It outputs an STL file like this one: You can also see an inte

Max Halford 3 Dec 29, 2021
Program designed to mass edit and watermark all photos in a directory

Photographer-All-In-One This is a program designed for photographers to mass edit or watermark photos (.jpg || .png) You can run this program from any

Brad Martin 2 Nov 23, 2021
Validate arbitrary image uploads from incoming data urls while preserving file integrity but removing EXIF and unwanted artifacts and RCE exploit potential

Validate arbitrary base64-encoded image uploads as incoming data urls while preserving image integrity but removing EXIF and unwanted artifacts and mitigating RCE-exploit potential.

A3R0 1 Jan 10, 2022
image-processing exercises.

image_processing Assignment 21 Checkered Board Create a chess table using numpy and opencv. view: Color Correction Reverse black and white colors with

Benyamin Zojaji 25 Dec 15, 2022
Draw a torus passing through three given points.

PyTorusThreePoints Draw a torus passing through three given points. Usage import numpy as np import pyvista as pv from torus_three_points.main import

2 Nov 19, 2021
An example which streams RGB-D images over spout.

Spout RGB-D Example An example which streams RGB-D images over spout with visiongraph. Due to the spout dependency this currently only works on Window

Florian Bruggisser 4 Nov 14, 2022
A simple image-level annotation tool supporting multi-channel images for napari.

napari-labelimg4classification A simple image-level annotation tool supporting multi-channel images for napari. This napari plugin was generated with

4 May 16, 2022