RATCHET is a Medical Transformer for Chest X-ray Diagnosis and Reporting

Related tags

Deep LearningRATCHET
Overview

RATCHET: RAdiological Text Captioning for Human Examined Thoraxes

RATCHET is a Medical Transformer for Chest X-ray Diagnosis and Reporting. Based on the architecture featured in Attention Is All You Need. This network is trained and validated on the MIMIC-CXR v2.0.0 dataset.

Architecture

RATCHET Architecture

Run the code

Download pretrained weights (v1, v2) and put in ./checkpoints folder. Then run:

streamlit run web_demo.py
Environment:
Python 3.7.4
Packages:
imageio                  2.8.0
matplotlib               3.2.1
numpy                    1.18.4
pandas                   1.0.3
scikit-image             0.17.2
streamlit                0.67.1
tensorflow-gpu           2.3.0
tokenizers               0.7.0
tqdm                     4.46.0

Results

     Cardiomegaly           Cardiomegaly Attention Plot     

Generated Text:

In comparison with the study of ___, there is little overall change. Again there is substantial enlargement of the cardiac silhouette with a dual-channel pacer device in place. No evidence of vascular congestion or acute focal pneumonia. Blunting of the costophrenic angles is again seen.

More Examples

More Captioning Examples

Official Pytorch implementation of the paper "Action-Conditioned 3D Human Motion Synthesis with Transformer VAE", ICCV 2021

ACTOR Official Pytorch implementation of the paper "Action-Conditioned 3D Human Motion Synthesis with Transformer VAE", ICCV 2021. Please visit our we

Mathis Petrovich 248 Dec 23, 2022
PyTorch implementation of "Dataset Knowledge Transfer for Class-Incremental Learning Without Memory" (WACV2022)

Dataset Knowledge Transfer for Class-Incremental Learning Without Memory [Paper] [Slides] Summary Introduction Installation Reproducing results Citati

Habib Slim 5 Dec 05, 2022
A Python parser that takes the content of a text file and then reads it into variables.

Text-File-Parser A Python parser that takes the content of a text file and then reads into variables. Input.text File 1. What is your ***? 1. 18 -

Kelvin 0 Jul 26, 2021
Independent and minimal implementations of some reinforcement learning algorithms using PyTorch (including PPO, A3C, A2C, ...).

PyTorch RL Minimal Implementations There are implementations of some reinforcement learning algorithms, whose characteristics are as follow: Less pack

Gemini Light 4 Dec 31, 2022
An updated version of virtual model making

Model-Swap-Face v2   这个项目是基于stylegan2 pSp制作的,比v1版本Model-Swap-Face在推理速度和图像质量上有一定提升。主要的功能是将虚拟模特进行环球不同区域的风格转换,目前转换器提供西欧模特、东亚模特和北非模特三种主流的风格样式,可帮我们实现生产资料零成

seeprettyface.com 62 Dec 09, 2022
Library to enable Bayesian active learning in your research or labeling work.

Bayesian Active Learning (BaaL) BaaL is an active learning library developed at ElementAI. This repository contains techniques and reusable components

ElementAI 687 Dec 25, 2022
A PyTorch implementation of " EfficientNet: Rethinking Model Scaling for Convolutional Neural Networks."

EfficientNet A PyTorch implementation of EfficientNet: Rethinking Model Scaling for Convolutional Neural Networks. [arxiv] [Official TF Repo] Implemen

AhnDW 298 Dec 10, 2022
Instance-based label smoothing for improving deep neural networks generalization and calibration

Instance-based Label Smoothing for Neural Networks Pytorch Implementation of the algorithm. This repository includes a new proposed method for instanc

Mohamed Maher 1 Aug 13, 2022
End-to-end machine learning project for rices detection

Basmatinet Welcome to this project folks ! Whether you like it or not this project is all about riiiiice or riz in french. It is also about Deep Learn

Béranger 47 Jun 18, 2022
This is the code repository implementing the paper "TreePartNet: Neural Decomposition of Point Clouds for 3D Tree Reconstruction".

TreePartNet This is the code repository implementing the paper "TreePartNet: Neural Decomposition of Point Clouds for 3D Tree Reconstruction". Depende

刘彦超 34 Nov 30, 2022
Code for training and evaluation of the model from "Language Generation with Recurrent Generative Adversarial Networks without Pre-training"

Language Generation with Recurrent Generative Adversarial Networks without Pre-training Code for training and evaluation of the model from "Language G

Amir Bar 253 Sep 14, 2022
The Multi-Mission Maximum Likelihood framework (3ML)

PyPi Conda The Multi-Mission Maximum Likelihood framework (3ML) A framework for multi-wavelength/multi-messenger analysis for astronomy/astrophysics.

The Multi-Mission Maximum Likelihood (3ML) 62 Dec 30, 2022
Turn based roguelike in python

pyTB Turn based roguelike in python Documentation can be found here: http://mcgillij.github.io/pyTB/index.html Screenshot Dependencies Written in Pyth

Jason McGillivray 4 Sep 29, 2022
To build a regression model to predict the concrete compressive strength based on the different features in the training data.

Cement-Strength-Prediction Problem Statement To build a regression model to predict the concrete compressive strength based on the different features

Ashish Kumar 4 Jun 11, 2022
Principled Detection of Out-of-Distribution Examples in Neural Networks

ODIN: Out-of-Distribution Detector for Neural Networks This is a PyTorch implementation for detecting out-of-distribution examples in neural networks.

189 Nov 29, 2022
An LSTM based GAN for Human motion synthesis

GAN-motion-Prediction An LSTM based GAN for motion synthesis has a few issues reading H3.6M data from A.Jain et al , will fix soon. Prediction of the

Amogh Adishesha 9 Jun 17, 2022
A super lightweight Lagrangian model for calculating millions of trajectories using ERA5 data

Easy-ERA5-Trck Easy-ERA5-Trck Galleries Install Usage Repository Structure Module Files Version iteration Easy-ERA5-Trck is a super lightweight Lagran

Zhenning Li 26 Nov 19, 2022
An official implementation of the Anchor DETR.

Anchor DETR: Query Design for Transformer-Based Detector Introduction This repository is an official implementation of the Anchor DETR. We encode the

MEGVII Research 276 Dec 28, 2022
Implementation of "With a Little Help from my Temporal Context: Multimodal Egocentric Action Recognition, BMVC, 2021" in PyTorch

Multimodal Temporal Context Network (MTCN) This repository implements the model proposed in the paper: Evangelos Kazakos, Jaesung Huh, Arsha Nagrani,

Evangelos Kazakos 13 Nov 24, 2022
PyTorch-Multi-Style-Transfer - Neural Style and MSG-Net

PyTorch-Style-Transfer This repo provides PyTorch Implementation of MSG-Net (ours) and Neural Style (Gatys et al. CVPR 2016), which has been included

Hang Zhang 906 Jan 04, 2023