Our implementation of Gillespie's Stochastic Simulation Algorithm (SSA)

Related tags

Algorithmsssa
Overview

SSA

Our implementation of Gillespie's Stochastic Simulation Algorithm (SSA)

Requirements

  • python >=3.7
  • numpy
  • pandas
  • matplotlib
  • pyyaml

Command line usage

The main program kinetics.py can be used as below

python kinetics.py -f 

For more help

python kinetics.py --h

Input File

A sample input file can be found inside /src directory.

License

GNU GPL V3

Owner
Anoop Lab
The major focus of our research group the study of early events using computational chemistry, and developing methods for this study.
Anoop Lab
Ralebel is an interpreted, Haitian Creole programming language that aims to help Haitians by starting with the fundamental algorithm

Ralebel is an interpreted, Haitian Creole programming language that aims to help Haitians by starting with the fundamental algorithm

Lub Lorry Lamysère 5 Dec 01, 2022
Sign data using symmetric-key algorithm encryption.

Sign data using symmetric-key algorithm encryption. Validate signed data and identify possible validation errors. Uses sha-(1, 224, 256, 385 and 512)/hmac for signature encryption. Custom hash algori

Artur Barseghyan 39 Jun 10, 2022
All Algorithms implemented in Python

The Algorithms - Python All algorithms implemented in Python (for education) These implementations are for learning purposes only. Therefore they may

The Algorithms 150.6k Jan 03, 2023
GoldenSAML Attack Libraries and Framework

WhiskeySAML and Friends TicketsPlease TicketsPlease: Python library to assist with the generation of Kerberos tickets, remote retrieval of ADFS config

Secureworks 43 Jan 03, 2023
Minimal pure Python library for working with little-endian list representation of bit strings.

bitlist Minimal Python library for working with bit vectors natively. Purpose This library allows programmers to work with a native representation of

Andrei Lapets 0 Jul 25, 2022
Implementation of an ordered dithering algorithm used in computer graphics

Ordered Dithering Project In this project, we use an ordered dithering method to turn an RGB image, first to a gray scale image and then, turn the gra

1 Oct 26, 2021
Data Model built using Logistic Regression Algorithm on Python.

Logistic-Regression Problem Statement: Your client is a retail banking institution. Term deposits are a major source of income for a bank. A term depo

Hemanth Babu Muthineni 0 Dec 25, 2021
A fast, pure python implementation of the MuyGPs Gaussian process realization and training algorithm.

Fast implementation of the MuyGPs Gaussian process hyperparameter estimation algorithm MuyGPs is a GP estimation method that affords fast hyperparamet

Lawrence Livermore National Laboratory 13 Dec 02, 2022
Official implementation of "Path Planning using Neural A* Search" (ICML-21)

Path Planning using Neural A* Search (ICML 2021) This is a repository for the following paper: Ryo Yonetani*, Tatsunori Taniai*, Mohammadamin Barekata

OMRON SINIC X 82 Jan 07, 2023
This repository is an individual project made at BME with the topic of self-driving car simulator and control algorithm.

BME individual project - NEAT based self-driving car This repository is an individual project made at BME with the topic of self-driving car simulator

NGO ANH TUAN 1 Dec 13, 2021
Solving a card game with three search algorithms: BFS, IDS, and A*

Search Algorithms Overview In this project, we want to solve a card game with three search algorithms. In this card game, we have to sort our cards by

Korosh 5 Aug 04, 2022
Rover. Finding the shortest pass by Dijkstra’s shortest path algorithm

rover Rover. Finding the shortest path by Dijkstra’s shortest path algorithm Задача Вы — инженер, проектирующий роверы-беспилотники. Вам надо спроекти

1 Nov 11, 2021
A raw implementation of the nearest insertion algorithm to resolve TSP problems in a TXT format.

TSP-Nearest-Insertion A raw implementation of the nearest insertion algorithm to resolve TSP problems in a TXT format. Instructions Load a txt file wi

sjas_Phantom 1 Dec 02, 2021
A tictactoe where you never win, implemented using minimax algorithm

Unbeatable_TicTacToe A tictactoe where you never win, implemented using minimax algorithm Requirements Make sure you have the pygame module along with

Jessica Jolly 3 Jul 28, 2022
Fedlearn algorithm toolkit for researchers

Fedlearn algorithm toolkit for researchers

89 Nov 14, 2022
Pathfinding visualizer in pygame: A*

Pathfinding Visualizer A* What is this A* algorithm ? Simply put, it is an algorithm that aims to find the shortest possible path between two location

0 Feb 26, 2022
My own Unicode compression algorithm

Zee Code ZCode is a custom compression algorithm I originally developed for a competition held for the Spring 2019 Datastructures and Algorithms cours

Vahid Zehtab 2 Oct 20, 2021
Python Client for Algorithmia Algorithms and Data API

Algorithmia Common Library (python) Python client library for accessing the Algorithmia API For API documentation, see the PythonDocs Algorithm Develo

Algorithmia 138 Oct 26, 2022
The DarkRift2 networking framework written in Python 3

DarkRiftPy is Darkrift2 written in Python 3. The implementation is fully compatible with the original version. So you can write a client side on Python that connects to a Darkrift2 server written in

Anton Dobryakov 6 May 23, 2022
An implementation of ordered dithering algorithm in python as multimedia course project

One way of minimizing the size of an image is to simply reduce the number of bits you use to represent each pixel.

7 Dec 02, 2022