Our implementation of Gillespie's Stochastic Simulation Algorithm (SSA)

Related tags

Algorithmsssa
Overview

SSA

Our implementation of Gillespie's Stochastic Simulation Algorithm (SSA)

Requirements

  • python >=3.7
  • numpy
  • pandas
  • matplotlib
  • pyyaml

Command line usage

The main program kinetics.py can be used as below

python kinetics.py -f 

For more help

python kinetics.py --h

Input File

A sample input file can be found inside /src directory.

License

GNU GPL V3

Owner
Anoop Lab
The major focus of our research group the study of early events using computational chemistry, and developing methods for this study.
Anoop Lab
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Our implementation of Gillespie's Stochastic Simulation Algorithm (SSA)

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