PyTorch implementation of MICCAI 2018 paper "Liver Lesion Detection from Weakly-labeled Multi-phase CT Volumes with a Grouped Single Shot MultiBox Detector"

Related tags

Deep Learningobject-detectionmedical-image-computingliver-segmentationsingle-shot-multibox-detectormedical-diagnosticsliver-disease
Overview

Grouped SSD (GSSD) for liver lesion detection from multi-phase CT

Note: the MICCAI 2018 paper only covers the multi-phase lesion detection part of this project. The liver segmentation with U-net is currently WIP.

Pixel-wise liver segmentation & multi-phase lesion detection from CT image in PyTorch.

This repo uses in-house industrial CT dataset, so the code for data loading is little nasty & unstructured, and I cannot release the dataset.

But structures of the liver segmentation data are nearly identical to 3Dircadb (http://www.ircad.fr/research/3dircadb/). And the lesion detection dataset looks like the figure 1 from our MICCAI 2018 paper.

train_liverseg_unet.py: U-net training for liver segmentation. Assumes 512x512 slices of dicom CT image and their corresponding binary segmentation masks.

ssd_liverdet/train_lesion_multiphase.py: GSSD training for liver lesion detection. Assumes 4-phase 512x512 slices of dicom CT image and their corresponding bounding box annotations.

The original SSD implementation is hard-forked from here.

Owner
Sang-gil Lee
Ph.D. student in ML/AI @ Seoul National University, South Korea. I do deep learning for sequence & generative models.
Sang-gil Lee
GitHub Repository
Creating Artificial Life with Reinforcement Learning

Although Evolutionary Algorithms have shown to result in interesting behavior, they focus on learning across generations whereas behavior could also be learned during ones lifetime.

Maarten Grootendorst 49 Dec 21, 2022
Locally Differentially Private Distributed Deep Learning via Knowledge Distillation (LDP-DL)

Locally Differentially Private Distributed Deep Learning via Knowledge Distillation (LDP-DL) A preprint version of our paper: Link here This is a samp

Di Zhuang 3 Jan 08, 2023
Predicting path with preference based on user demonstration using Maximum Entropy Deep Inverse Reinforcement Learning in a continuous environment

Preference-Planning-Deep-IRL Introduction Check my portfolio post Dependencies Gym stable-baselines3 PyTorch Usage Take Demonstration python3 record.

Tianyu Li 9 Oct 26, 2022
Self-Supervised Monocular DepthEstimation with Internal Feature Fusion(arXiv), BMVC2021

DIFFNet This repo is for Self-Supervised Monocular Depth Estimation with Internal Feature Fusion(arXiv), BMVC2021 A new backbone for self-supervised d

Hang 94 Dec 25, 2022
Pythonic particle-based (super-droplet) warm-rain/aqueous-chemistry cloud microphysics package with box, parcel & 1D/2D prescribed-flow examples in Python, Julia and Matlab

PySDM PySDM is a package for simulating the dynamics of population of particles. It is intended to serve as a building block for simulation systems mo

Atmospheric Cloud Simulation Group @ Jagiellonian University 32 Oct 18, 2022
Official code for our ICCV paper: "From Continuity to Editability: Inverting GANs with Consecutive Images"

GANInversion_with_ConsecutiveImgs Official code for our ICCV paper: "From Continuity to Editability: Inverting GANs with Consecutive Images" https://a

QingyangXu 38 Dec 07, 2022
deep learning model that learns to code with drawing in the Processing language

sketchnet sketchnet - processing code generator can we teach a computer to draw pictures with code. We use Processing and java/jruby code paired with

41 Dec 12, 2022
VD-BERT: A Unified Vision and Dialog Transformer with BERT

VD-BERT: A Unified Vision and Dialog Transformer with BERT PyTorch Code for the following paper at EMNLP2020: Title: VD-BERT: A Unified Vision and Dia

Salesforce 44 Nov 01, 2022
SEJE Pytorch implementation

SEJE is a prototype for the paper Learning Text-Image Joint Embedding for Efficient Cross-Modal Retrieval with Deep Feature Engineering. Contents Inst

0 Oct 21, 2021
Convert onnx models to pytorch.

onnx2torch onnx2torch is an ONNX to PyTorch converter. Our converter: Is easy to use – Convert the ONNX model with the function call convert; Is easy

ENOT 264 Dec 30, 2022
Video Instance Segmentation with a Propose-Reduce Paradigm (ICCV 2021)

Propose-Reduce VIS This repo contains the official implementation for the paper: Video Instance Segmentation with a Propose-Reduce Paradigm Huaijia Li

DV Lab 39 Nov 23, 2022
PyTorch implementation of DeepDream algorithm

neural-dream This is a PyTorch implementation of DeepDream. The code is based on neural-style-pt. Here we DeepDream a photograph of the Golden Gate Br

121 Nov 05, 2022
IMBENS: class-imbalanced ensemble learning in Python.

IMBENS: class-imbalanced ensemble learning in Python. Links: [Documentation] [Gallery] [PyPI] [Changelog] [Source] [Download] [知乎/Zhihu] [中文README] [a

Zhining Liu 176 Jan 04, 2023
Official implementation of the paper 'High-Resolution Photorealistic Image Translation in Real-Time: A Laplacian Pyramid Translation Network' in CVPR 2021

LPTN Paper | Supplementary Material | Poster High-Resolution Photorealistic Image Translation in Real-Time: A Laplacian Pyramid Translation Network Ji

372 Dec 26, 2022
This repository is the official implementation of Unleashing the Power of Contrastive Self-Supervised Visual Models via Contrast-Regularized Fine-Tuning (NeurIPS21).

Core-tuning This repository is the official implementation of ``Unleashing the Power of Contrastive Self-Supervised Visual Models via Contrast-Regular

vanint 18 Dec 17, 2022
Supplementary code for the paper "Meta-Solver for Neural Ordinary Differential Equations" https://arxiv.org/abs/2103.08561

Meta-Solver for Neural Ordinary Differential Equations Towards robust neural ODEs using parametrized solvers. Main idea Each Runge-Kutta (RK) solver w

Julia Gusak 25 Aug 12, 2021
A Simplied Framework of GAN Inversion

Framework of GAN Inversion Introcuction You can implement your own inversion idea using our repo. We offer a full range of tuning settings (in hparams

Kangneng Zhou 13 Sep 27, 2022
Invariant Causal Prediction for Block MDPs

MISA Abstract Generalization across environments is critical to the successful application of reinforcement learning algorithms to real-world challeng

Meta Research 41 Sep 17, 2022
Large-Scale Pre-training for Person Re-identification with Noisy Labels (LUPerson-NL)

LUPerson-NL Large-Scale Pre-training for Person Re-identification with Noisy Labels (LUPerson-NL) The repository is for our CVPR2022 paper Large-Scale

43 Dec 26, 2022
Neural network for stock price prediction

neural_network_for_stock_price_prediction Neural networks for stock price predic

2 Feb 04, 2022