Single machine, multiple cards training; mix-precision training; DALI data loader.

Overview

Template

Script Category Description

Category script
comparison script train.py, loader.py
for single-machine-multiple-cards training train_DP.py, train_DDP.py
for mixed-precision training train_amp.py
for DALI data loading loader_DALI.py

Note: The comment # new # in script represents newly added code block (compare to comparison script, e.g., train.py)

Environment

  • CPU: Intel(R) Xeon(R) Gold 5118 CPU @ 2.30GHz
  • GPU: RTX 2080Ti
  • OS: Ubuntu 18.04.3 LTS
  • DL framework: Pytorch 1.6.0, Torchvision 0.7.0

Single-machine-multiple-cards training (two cards for example)

train_DP.py -- Parallel computing using nn.DataParallel

Usage:

cd Template/src
python train_DP.py

Superiority:
- Easy to use
- Accelerate training (inconspicuous)
Weakness:
- Unbalanced load
Description:
DataParallel is very convenient to use, we just need to use DataParallel to package the model:

model = ...
model = nn.DataParallel(model)

train_DDP.py -- Parallel computing using torch.distributed

Usage:

cd Template/src
CUDA_VISIBLE_DEVICES=0,1 python -m torch.distributed.launch --nproc_per_node=2 train_DDP.py

Superiority:
- balanced load
- Accelerate training (conspicuous)
Weakness:
- Hard to use
Description:
Unlike DataParallel who control multiple GPUs via single-process, distributed creates multiple process. we just need to accomplish one code and torch will automatically assign it to n processes, each running on corresponding GPU.
To config distributed model via torch.distributed, the following steps needed to be performed:

  1. Get current process index:
parser = argparse.ArgumentParser()
parser.add_argument('--local_rank', default=-1, type=int, help='node rank for distributed training')
opt = parser.parse_args()
# print(opt.local_rank)
  1. Set the backend and port used for communication between GPUs:
dist.init_process_group(backend='nccl')
  1. Config current device according to the local_rank:
torch.cuda.set_device(opt.local_rank)
  1. Config data sampler:
dataset = ...
sampler = distributed.DistributedSampler(dataset)
dataloader = DataLoader(dataset=dataset, ..., sampler=sampler)
  1. Package the model:
model = ...
model = nn.SyncBatchNorm.convert_sync_batchnorm(model)
model = nn.parallel.DistributedDataParallel(model.cuda(), device_ids=[opt.local_rank])

Mixed-precision training

train_amp.py -- Mixed-precision training using torch.cuda.amp

Usage:

cd Template/src
python train_amp.py

Superiority:
- Easy to use
- Accelerate training (conspicuous for heavy model)
Weakness:
- Accelerate training (inconspicuous for light model)
Description:
Mixed-precision training is a set of techniques that allows us to use fp16 without causing our model training to diverge.
To config mixed-precision training via torch.cuda.amp, the following steps needed to be performed:

  1. Instantiate GradScaler object:
scaler = torch.cuda.amp.GradScaler()
  1. Modify the traditional optimization process:
# Before:
optimizer.zero_grad()
preds = model(imgs)
loss = loss_func(preds, labels)
loss.backward()
optimizer.step()

# After:
optimizer.zero_grad()
with torch.cuda.amp.autocast():
    preds = model(imgs)
    loss = loss_func(preds, labels)
scaler.scale(loss).backward()
scaler.step(optimizer)
scaler.update()

DALI data loading

loader_DALI.py -- Data loading using nvidia.dali

Prerequisite:
- NVIDIA Driver supporting CUDA 10.0 or later (i.e., 410.48 or later driver releases)
- PyTorch 0.4 or later
- Data organization format that matches the code, the format that matches the loader_DALI.py is as follows:
 /dataset / train or test / img or gt / sub_dirs / imgs [View]
Usage:

pip install --extra-index-url https://developer.download.nvidia.com/compute/redist --upgrade nvidia-dali-cuda102
cd Template/src
python loader_DALI.py --data_source /path/to/dataset

Superiority:
- Easy to use
- Accelerate data loading
Weakness:
- Occupy video memory
Description:
NVIDIA Data Loading Library (DALI) is a collection of highly optimized building blocks and an execution engine that accelerates the data pipeline for computer vision and audio deep learning applications.
To load dataset using DALI, the following steps needed to be performed:

  1. Config external input iterator:
eii = ExternalInputIterator(data_source=opt.data_source, batch_size=opt.batch_size, shuffle=True)
# A demo of external input iterator
class ExternalInputIterator(object):
    def __init__(self, data_source, batch_size, shuffle):
        self.batch_size = batch_size
        
        img_paths = sorted(glob.glob(data_source + '/train' + '/blurry' + '/*/*.*'))
        gt_paths = sorted(glob.glob(data_source + '/train' + '/sharp' + '/*/*.*'))
        self.paths = list(zip(*(img_paths,gt_paths)))
        if shuffle:
            random.shuffle(self.paths)

    def __iter__(self):
        self.i = 0
        return self

    def __next__(self):
        imgs = []
        gts = []

        if self.i >= len(self.paths):
            self.__iter__()
            raise StopIteration

        for _ in range(self.batch_size):
            img_path, gt_path = self.paths[self.i % len(self.paths)]
            imgs.append(np.fromfile(img_path, dtype = np.uint8))
            gts.append(np.fromfile(gt_path, dtype = np.uint8))
            self.i += 1
        return (imgs, gts)

    def __len__(self):
        return len(self.paths)

    next = __next__
  1. Config pipeline:
pipe = externalSourcePipeline(batch_size=opt.batch_size, num_threads=opt.num_workers, device_id=0, seed=opt.seed, external_data = eii, resize=opt.resize, crop=opt.crop)
# A demo of pipeline
@pipeline_def
def externalSourcePipeline(external_data, resize, crop):
    imgs, gts = fn.external_source(source=external_data, num_outputs=2)
    
    crop_pos = (fn.random.uniform(range=(0., 1.)), fn.random.uniform(range=(0., 1.)))
    flip_p = (fn.random.coin_flip(), fn.random.coin_flip())
    
    imgs = transform(imgs, resize, crop, crop_pos, flip_p)
    gts = transform(gts, resize, crop, crop_pos, flip_p)
    return imgs, gts

def transform(imgs, resize, crop, crop_pos, flip_p):
    imgs = fn.decoders.image(imgs, device='mixed')
    imgs = fn.resize(imgs, resize_y=resize)
    imgs = fn.crop(imgs, crop=(crop,crop), crop_pos_x=crop_pos[0], crop_pos_y=crop_pos[1])
    imgs = fn.flip(imgs, horizontal=flip_p[0], vertical=flip_p[1])
    imgs = fn.transpose(imgs, perm=[2, 0, 1])
    imgs = imgs/127.5-1
    
    return imgs
  1. Instantiate DALIGenericIterator object:
dgi = DALIGenericIterator(pipe, output_map=["imgs", "gts"], last_batch_padded=True, last_batch_policy=LastBatchPolicy.PARTIAL, auto_reset=True)
  1. Read data:
for i, data in enumerate(dgi):
    imgs = data[0]['imgs']
    gts = data[0]['gts']
This repository contains some analysis of possible nerdle answers

Nerdle Analysis https://nerdlegame.com/ This repository contains some analysis of possible nerdle answers. Here's a quick overview: nerdle.py contains

0 Dec 16, 2022
sportsdataverse python package

sportsdataverse-py See CHANGELOG.md for details. The goal of sportsdataverse-py is to provide the community with a python package for working with spo

Saiem Gilani 37 Dec 27, 2022
Creating a statistical model to predict 10 year treasury yields

Predicting 10-Year Treasury Yields Intitially, I wanted to see if the volatility in the stock market, represented by the VIX index (data source), had

10 Oct 27, 2021
Python Library for learning (Structure and Parameter) and inference (Statistical and Causal) in Bayesian Networks.

pgmpy pgmpy is a python library for working with Probabilistic Graphical Models. Documentation and list of algorithms supported is at our official sit

pgmpy 2.2k Dec 25, 2022
Analytical view of olist e-commerce in Brazil

Analysis of E-Commerce Public Dataset by Olist The objective of this project is to propose an analytical view of olist e-commerce in Brazil. For this

Gurpreet Singh 1 Jan 11, 2022
Feature Detection Based Template Matching

Feature Detection Based Template Matching The classification of the photos was made using the OpenCv template Matching method. Installation Use the pa

Muhammet Erem 2 Nov 18, 2021
Evidence enables analysts to deliver a polished business intelligence system using SQL and markdown.

Evidence enables analysts to deliver a polished business intelligence system using SQL and markdown

915 Dec 26, 2022
PATC: Introduction to Big Data Analytics. Practical Data Analytics for Solving Real World Problems

PATC: Introduction to Big Data Analytics. Practical Data Analytics for Solving Real World Problems

1 Feb 07, 2022
Automatic earthquake catalog building workflow: EQTransformer + Siamese EQTransformer + PickNet + REAL + HypoInverse

Automatic regional-scale earthquake catalog building workflow: EQTransformer + Siamese EQTransforme

Xiao Zhuowei 9 Nov 27, 2022
Modular analysis tools for neurophysiology data

Neuroanalysis Modular and interactive tools for analysis of neurophysiology data, with emphasis on patch-clamp electrophysiology. Functions for runnin

Allen Institute 5 Dec 22, 2021
CubingB is a timer/analyzer for speedsolving Rubik's cubes, with smart cube support

CubingB is a timer/analyzer for speedsolving Rubik's cubes (and related puzzles). It focuses on supporting "smart cubes" (i.e. bluetooth cubes) for recording the exact moves of a solve in real time.

Zach Wegner 5 Sep 18, 2022
Validation and inference over LinkML instance data using souffle

Translates LinkML schemas into Datalog programs and executes them using Souffle, enabling advanced validation and inference over instance data

Linked data Modeling Language 7 Aug 07, 2022
Full automated data pipeline using docker images

Create postgres tables from CSV files This first section is only relate to creating tables from CSV files using postgres container alone. Just one of

1 Nov 21, 2021
A crude Hy handle on Pandas library

Quickstart Hyenas is a curde Hy handle written on top of Pandas API to allow for more elegant access to data-scientist's powerhouse that is Pandas. In

Peter Výboch 4 Sep 05, 2022
Utilize data analytics skills to solve real-world business problems using Humana’s big data

Humana-Mays-2021-HealthCare-Analytics-Case-Competition- The goal of the project is to utilize data analytics skills to solve real-world business probl

Yongxian (Caroline) Lun 1 Dec 27, 2021
Approximate Nearest Neighbor Search for Sparse Data in Python!

Approximate Nearest Neighbor Search for Sparse Data in Python! This library is well suited to finding nearest neighbors in sparse, high dimensional spaces (like text documents).

Meta Research 906 Jan 01, 2023
pandas: powerful Python data analysis toolkit

pandas is a Python package that provides fast, flexible, and expressive data structures designed to make working with "relational" or "labeled" data both easy and intuitive.

pandas 36.4k Jan 03, 2023
BigDL - Evaluate the performance of BigDL (Distributed Deep Learning on Apache Spark) in big data analysis problems

Evaluate the performance of BigDL (Distributed Deep Learning on Apache Spark) in big data analysis problems.

Vo Cong Thanh 1 Jan 06, 2022
Port of dplyr and other related R packages in python, using pipda.

Unlike other similar packages in python that just mimic the piping syntax, datar follows the API designs from the original packages as much as possible, and is tested thoroughly with the cases from t

179 Dec 21, 2022