Linux GUI app to codon optimize many single-fasta files with coding sequences , using many taxonomy ids

Related tags

Miscellaneouscodon_optimize_cds_with_many_taxids_singlefasta
Overview

codon_optimize_cds_with_many_taxids_singlefasta DOI

Linux GUI app to codon optimize many single-fasta files with coding sequences, using many taxonomy ids

Depedences

  1. linux OS (tested on ubuntu 20.04 LTS)
  2. python 3.8.2 or later
  3. anaconda or miniconda
  4. Gooey conda install -c conda-forge gooey(if you get errors during installation or runtime try installing gtk sudo apt-get install libgtk-3-dev)
  5. biopython pip install biopython
  6. pandas pip install pandas
  7. dnachisel pip install dnachisel

linux desktop app installation

  1. open a linux text editor and edit in the python file the shebang line (to find where python is type in the terminal which python3)
  2. convert to executable with chmod +x codon_optimize_cds_with_many_taxidS_singlefasta_gui.py
  3. open a linux text editor and edit the PATHs in the .desktop file
  4. move the file to /usr/share/applications
  5. reboot your machine

Output

The output single-fasta files will have the same prefix as the input ones and as suffix the taxonomy ids of the organisms they are codon optimized for

You might also like...
A GUI love Calculator which saves all the User Data in text file(sql based script will be uploaded soon). Interative GUI. Even For Admin Panel

Love-Calculator A GUI love Calculator which saves all the User Data in text file(sql based script will be uploaded soon). Interative GUI, even For Adm

Adithya Krishnan 1 Mar 22, 2022
Pardus-flatpak-gui - A Flatpak GUI for Pardus
Pardus-flatpak-gui - A Flatpak GUI for Pardus

Pardus Flatpak GUI A GUI for Flatpak. You can run, install (from FlatHub and fro

Erdem Ersoy 2 Feb 17, 2022
Craxk is a SINGLE AND NON-REPLICABLE Hash that uses data from the hardware where it is executed to form a hash that can only be reproduced by a single machine.
Craxk is a SINGLE AND NON-REPLICABLE Hash that uses data from the hardware where it is executed to form a hash that can only be reproduced by a single machine.

What is Craxk ? Craxk is a UNIQUE AND NON-REPLICABLE Hash that uses data from the hardware where it is executed to form a hash that can only be reprod

null 5 Jun 19, 2021
Linux Pressure Stall Information (PSI) Status App
Linux Pressure Stall Information (PSI) Status App

Linux Pressure Stall Information (PSI) Status App psistat is a simple python3 program to display the PSIs and to capture/display exception events. psi

Joe D 3 Sep 18, 2022
Explore related sequences in the OEIS

OEIS explorer This is a tool for exploring two different kinds of relationships between sequences in the OEIS: mentions (links) of other sequences on

Alex Hall 6 Mar 15, 2022
Annotates sequences with Eggnog-mapper and hhblits against PDB70

Annotating "hypothetical" proteins with the PDB See config/ for configuration information. This workflow takes as input a set of protein sequences. It

null 1 Apr 5, 2022
Ingestinator is my personal VFX pipeline tool for ingesting folders containing frame sequences that have been pulled and downloaded to a local folder

Ingestinator Ingestinator is my personal VFX pipeline tool for ingesting folders containing frame sequences that have been pulled and downloaded to a

Henry Wilkinson 2 Nov 18, 2022
Tuple-sum-filter - Library to play with filtering numeric sequences by sums of their pairs, triplets, etc. With a bonus CLI demo

Tuple Sum Filter A library to play with filtering numeric sequences by sums of t

Laurence Billingham 1 Feb 16, 2022
This repo is related to Google Coding Challenge, given to Bright Network Internship Experience 2021.
This repo is related to Google Coding Challenge, given to Bright Network Internship Experience 2021.

BrightNetworkUK-GCC-2021 This repo is related to Google Coding Challenge, given to Bright Network Internship Experience 2021. Language used here is py

Dareer Ahmad Mufti 28 May 23, 2022
Releases(v1.0)
Owner
Olga Tsiouri
Biochemist & Biotechnologist. PhD candidate at @plant_env, @uth.gr #bioinformatics, plant-fungal omics
Olga Tsiouri
GitHub Repository
Home Assistant integration for spanish electrical data providers (e.g., datadis)

homeassistant-edata Esta integración para Home Assistant te permite seguir de un vistazo tus consumos y máximas potencias alcanzadas. Para ello, se ap

VMG 163 Jan 05, 2023
Stock Monitoring

Stock Monitoring Description It is a stock monitoring script. This repository is still under developing. Getting Started Prerequisites & Installing pi

Sission 1 Feb 03, 2022
Mechanized literally means automation.

Mechanized literally means automation. And this branch which you are now observing is automated by the python script. This python project actually automates my workflow related to Git & Github.

Shreejan Dolai 4 Nov 11, 2022
Type Persian without confusing words for yourself and others, in Adobe Connect

About In the Adobe Connect chat section, to type in Persian or Arabic, the written words will be confused and will be written and sent illegibly (This

Matin Najafi 23 Nov 26, 2021
A python script providing an idea of how a MindSphere application, e.g., a dashboard, can be displayed around the clock without the need of manual re-authentication on enforced session expiration

A python script providing an idea of how a MindSphere application, e.g., a dashboard, can be displayed around the clock without the need of manual re-authentication on enforced session expiration

MindSphere 3 Jun 03, 2022
Code repo for the book "Feature Engineering for Machine Learning," by Alice Zheng and Amanda Casari, O'Reilly 2018

feature-engineering-book This repo accompanies "Feature Engineering for Machine Learning," by Alice Zheng and Amanda Casari. O'Reilly, 2018. The repo

Alice Zheng 1.3k Dec 30, 2022
Fully cross-platform toolkit (and library!) for MachO+Obj-C editing/analysis

fully cross-platform toolkit (and library!) for MachO+Obj-C editing/analysis. Includes a cli kit, a curses GUI, ObjC header dumping, and much more.

cynder 301 Dec 28, 2022
A Python application that simulates the rolling of a dice, randomly picking one of the 6 faces and then displaying it.

dice-roller-app This is an application developed in Python that shuffles between the 6 faces of a dice, using buttons to shuffle and close the applica

Paddy Costelloe 0 Jul 20, 2021
script buat mengcrack

setan script buat mengcrack cara install $ pkg install upgrade && pkg update $ pkg install python $ pkg install git $ pip install requests $ pip insta

1 Nov 03, 2021
Wordle Solver

Wordle Solver Installation Install the following onto your computer: Python 3.10.x Download Page Run pip install -r requirements.txt Instructions To r

John Bucknam 1 Feb 15, 2022
An example project which contains the Unity components necessary to complete Navigation2's SLAM tutorial with a Turtlebot3, using a custom Unity environment in place of Gazebo.

Navigation 2 SLAM Example This example provides a Unity Project and a colcon workspace that, when used together, allows a user to substitute Unity as

Unity Technologies 183 Jan 04, 2023
This code makes the logs provided by Fiddler proxy of the Google Analytics events coming from iOS more readable.

GA-beautifier-iOS This code makes the logs provided by Fiddler proxy of the Google Analytics events coming from iOS more readable. To run it, create a

Rafael Machado 3 Feb 02, 2022
Broken Link Finder is a Burp Extension to detect broken links for a passive scanning domains and links.

Broken Link Finder Broken Link Finder is a Burp Extension to detect broken links for a passive scanning domains and links. Inspired by InitRoot's link

Red Section 10 Sep 11, 2021
Block when attacker want to bypass the limit of request

Block when attacker want to bypass the limit of request

iFanpS 1 Dec 01, 2021
This repo holds custom callback plugin, so your Ansible could write everything in the PostgreSQL database.

English What is it? This is callback plugin that dumps most of the Ansible internal state to the external PostgreSQL database. What is this for? If yo

Sergey Pechenko 19 Oct 21, 2022
A webapp that timestamps key moments in a football clip

A look into what we're building Demo.mp4 Prerequisites Python 3 Node v16+ Steps to run Create a virtual environment. Activate the virtual environment.

Pranav 1 Dec 10, 2021
tgEasy | Easy for a Brighter Shine | Monkey Patcher Addon for Pyrogram

tgEasy | Easy for a Brighter Shine | Monkey Patcher Addon for Pyrogram

Jayant Hegde Kageri 35 Nov 12, 2022
🤖🧭Creates google-like navigation menu using python-telegram-bot wrapper

python telegram bot menu pagination Makes a google style pagination line for a list of items. In other words it builds a menu for navigation if you ha

Sergey Smirnov 9 Nov 27, 2022
How to build an Fahrenheit to Celsius Converter in Python

Generally to measure the temperature we make use of one of these two popular units i.e. Fahrenheit & Celsius.

PyLaboratory 0 Feb 07, 2022
Basic Clojure REPL for Sublime Text

Basic Clojure REPL for Sublime Text Goals: Decomplected: just REPL, nothing more Zero dependencies: works directly with pREPL Compact: Display code ev

Nikita Prokopov 23 Dec 24, 2021