Linux GUI app to codon optimize a directory with fasta files using taxonomy ids imported as a 1-column txt file (1 taxonomy id for each file)

Related tags

GUI Developmentcodon_optimize_cds_paired_with_taxids_singlefastas_gui
Overview

codon optimize cds paired with taxids singlefastas gui DOI

Linux GUI app to codon optimize a directory with fasta files using taxonomy ids imported as a 1-column txt file (1 taxonomy id for each file)

Depedences

  1. linux OS (tested on ubuntu 20.04 LTS)
  2. python 3.8.2 or later
  3. anaconda or miniconda
  4. Gooey conda install -c conda-forge gooey(if you get errors during installation or runtime try installing gtk sudo apt-get install libgtk-3-dev)
  5. biopython pip install biopython
  6. pandas pip install pandas
  7. dnachisel pip install dnachisel

linux desktop app installation

  1. open a linux text editor and edit in the python file the shebang line (to find where python is type in the terminal which python3)
  2. convert to executable with chmod +x codon_optimize_cds_paired_with_taxids_singlefastas_gui.py
  3. open a linux text editor and edit the PATHs in the .desktop file
  4. move the file to /usr/share/applications
  5. reboot your machine

Output

The output single-fasta files will have the same prefix as the input ones and as suffix the taxonomy id of the organism they are codon optimized for

You might also like...
A simple quiz app using API and GUI
A simple quiz app using API and GUI

GUI-Quiz-APP It's a simple quiz app using API and GUI.

KALPAK KUMAR DAS 1 Feb 3, 2022
GUI based app made in python using tkinter
GUI based app made in python using tkinter

Virtual Keyboard A GUI application made in python using tkinter This is my first ever proper GUI based application project after learning tkinter rece

AbhineetK 10 Dec 10, 2022
A GUI for designing Python GUI's for PySimpleGUI.
A GUI for designing Python GUI's for PySimpleGUI.

SimpleGUIBuilder A GUI for designing Python GUI's for PySimpleGUI. Installation There is none :) just download the file from a release and run it. Don

Miguel Martins 65 Dec 22, 2022
PyQt5 Sample GUI Program - Python PyQt5 Sample GUI application
PyQt5 Sample GUI Program - Python PyQt5 Sample GUI application

Python PyQt5 Sample GUI application Program work like this Designed GUI using De

Dimuth De Zoysa 5 Mar 27, 2022
Simple GUI python app to show a stocks graph performance. Made with Matplotlib and Tiingo.
Simple GUI python app to show a stocks graph performance. Made with Matplotlib and Tiingo.

stock-graph-python Simple GUI python app to show a stocks graph performance. Made with Matplotlib and Tiingo. Tiingo API Key You will need to add your

Toby 12 May 14, 2022
EZ Presence - A GUI-Python app which makes it easy to set a custom Discord Rich Presence. (BETA)
EZ Presence - A GUI-Python app which makes it easy to set a custom Discord Rich Presence. (BETA)

EZ Presence EZ Presence is a GUI-Python app which makes it easy to set any custom Discord Rich Presence. Using the App How to Run Since the app is in

notsniped 2 Mar 1, 2022
Weather-API-GUI-Tkinter - A weather tool made using tkinter which works by fetching query city weather using an API
Weather-API-GUI-Tkinter - A weather tool made using tkinter which works by fetching query city weather using an API

Weather-API-GUI-Tkinter ☁️ ❄️ version- 1️⃣ . 0️⃣ . 0️⃣ This repo contains a weat

SasiVatsal 4 Jul 8, 2022
Custom GUI for your Blender add-ons using Dear ImGui
Custom GUI for your Blender add-ons using Dear ImGui

Dear Imgui for Blender Use the infamous Dear ImGui library directly in your Blender scripts! This means custom GUI drawing in your operators: Normally

Elie Michel 83 Dec 25, 2022
Basic calculator using Tkinter GUI
Basic calculator using Tkinter GUI

Basic calculator using Tkinter GUI

Rogerio Penchel 17 Jan 9, 2022
Releases(v2.0)

  • v2.0(Jan 13, 2022)

  • v1.0(Jan 9, 2022)

    Linux GUI app to codon optimize a directory with fasta files using taxonomy ids imported as a 1-column txt file (1 taxonomy id for each file). The output single-fasta files will have the same prefix as the input ones and as suffix the taxonomy id of the organism they are codon optimized for.

    Source code(tar.gz)
    Source code(zip)
Owner
Olga Tsiouri
Biochemist & Biotechnologist. PhD candidate at @plant_env, @uth.gr #bioinformatics, plant-fungal omics
Olga Tsiouri
GitHub Repository
This repository contains some projects that I have done using Python + Tkinter.

This repository contains some projects that I have done using Python + Tkinter.

João Victor Vilela dos Santos 1 Nov 10, 2021
AutoKey, a desktop automation utility for Linux and X11.

AutoKey Contents About Installation Zero-installation Method Documentation Support Bug reports and Pull Requests Changelog License About AutoKey, a de

2.5k Dec 31, 2022
A really minimalistic operating system made using python's GUI module Tkinter.

BoxOS V1.0.0 About A really minimalistic operating system made using python's GUI module Tkinter. What seperates it from the other operating systems m

Fahim 2 Dec 08, 2022
Easily display all of your creative avatars to keep them consistent across websites.

PyAvatar Easily display all of your creative avatars to keep them consistent across websites. Key Features • Download • How To Use • Support • Contrib

William 2 Oct 02, 2022
This was my test project when i started to learn Python Tkinter. Its the simplest interface possible.

Rock-Paper-Scissors-Game- Project Description: This was my test project when i started to learn Python Tkinter. Its the simplest interface possible. R

Hassan Shahzad 2 Jan 17, 2022
Mini is a web browser application based on the Python PyQt web engine, made in 290 lines of code.

Mini Mini is a web browser application based on the Python PyQt web engine, made in 290 lines of code. The code is written and published as is, so the

Dmitry Karpenko 6 Nov 07, 2022
QGUI - 0.1MB超轻量Python GUI框架，用模板来快捷制作深度学习模型推理界面

QGUI - 0.1MB超轻量Python GUI框架，用模板来快捷制作深度学习模型推理界面

QPT Family 92 Nov 18, 2022
Redis GUI using Qt & Python

QRedis A Python, Qt based Redis client user interface. Help wanted Open to people who want to colaborate. Would like to know which features you would

Tiago Coutinho 58 Dec 09, 2022
GUI implementation of a Transformer chatbot. Suggests amicable responses to messages from friends.

conversation-helper GUI implementation of a Transformer chatbot. Suggests amicable responses to messages from friends. Screenshots Upcoming Release Im

Mark Musil 6 Nov 05, 2021
A simple todo GUI applicaiton

simple_todo_gui A simple todo GUI applicaiton To create an .exe file, run 'Python setup.py build' after installing PyQt5 and cx_Freeze with pip. Then

Dhammike Piyumal 2 Nov 11, 2021
Primeira interface (simples) desenvolvida em Python utilizando o PySimpleGUI

Interface-Python Sobre o projeto Primeira interface gráfica (simples) desenvolvida em Python utilizando o PySimpleGUI Interface Gráfica Tecnologias ut

Matheus Maia Alvarez 5 Apr 09, 2022
A simple Python Module for sending cross-platform desktop notifications on Windows, macOS and Linux

notify.py Cross platform desktop notifications for Python scripts and applications. Docs You can read the docs on this Git's Wiki, or here Supported P

Mustafa 178 Dec 26, 2022
A simple fusee-launcher frontend for macOS

A simple fusee-launcher frontend for macOS (Universal). Supports macOS = 10.9. It has libusb statically linked, so you don't need to install anything

rob 25 Dec 19, 2022
A Minimalistic Backup GUI for your Windows, Mac or Linux

BlobBackup is a minimalistic backup utility for your Windows, Mac or Linux computer. With an excellent engine, extensive storage support, and an easy

Bimba Shrestha 283 Nov 30, 2022
A cute running cat animation on your Windows/macOS taskbar.

RunCat by PySide6 A cute running cat animation on your Windows/macOS taskbar. Tags PyQt PySide RunCat Demo You only have to run the RunCat.exe. Run pi

見える 10 Sep 19, 2022
Project made in Qt Designer + Python, for evaluation in the subject Introduction to Programming in IFPE - Paulista campus.

Project made in Qt Designer + Python, for evaluation in the subject Introduction to Programming in IFPE - Paulista campus.

Paola Rodrigues 2 Apr 13, 2022
GUI for Volatility forensics tool written in PyQT5

Volatility GUI This is a GUI for Volatility forensics tool written in PyQT5 Prerequisites: 1- Installed version of Volatility. 2- Install PyQT5. sudo

Hamza Megahed 52 Jun 18, 2022
Bank-Project - A bank ATM simulator recreated in python

Bank-Project A bank ATM simulator recreated in python. NOTE: this repo is a translation of Rasphy2009/Proyecto-Banco Requirements (.py only) 🐍 Python

Rasphy 2 Jan 02, 2022
PyEditor - A Simple Text Editor for python

PyEditor work in progress Text Editor for python Installation git clone https://github.com/ArmenG888/PyEditor Install the libraries Linux or mac pip

ArmenG 3 Mar 15, 2022
ROS2 + PyQt5 Example

ROS2 + PyQt5 Example

Ar-Ray 4 Nov 15, 2022