Cluster Mutation Script

Get mutations appearing within user-defined clusters.

Usage

Clusters are defined in the clusters dict in main.py:

clusters = {
    '21A.Delta': ['11514.','4181.','6402.','27752T','28461G','22995A'],
    '21J.Delta': ['4181T','6402T','27752T','28461G','22995A'],
    '21I.Delta': ['5584G', '11514T', '22227T','27752T','28461G','22995A']
}

python main.py

Output is in folder output based on the name of the cluster in clusters dict.

Requirements

Requires internet connection since it queries https://github.com/cevo-public/LAPIS