A minimal Python package that produces slice plots through h5m DAGMC geometry files

Related tags

Data Visualizationdagmc_geometry_slice_plotter
Overview

A minimal Python package that produces slice plots through h5m DAGMC geometry files

Installation

pip install dagmc_geometry_slice_plotter

Python API Usage

These examples assume you have a h5m file called dagmc.h5m in the same folder that the Python script is being run from.

Create a plot of a slice through the geometry perpendicular to the Z axis and default settings elsewhere. This will slice through the the center of the geometry as plane_origin has not been specified.

from dagmc_geometry_slice_plotter import plot_slice_of_dagmc_geometry

plot = plot_slice_of_dagmc_geometry(
    dagmc_file_or_trimesh_object='dagmc.h5m',
    plane_normal=[0, 0, 1],
)

plot.show()

dagmc slice plot

Create a plot of a slice through the geometry perpendicular to the Z axis, offset by 200cm and with default settings elsewhere.

from dagmc_geometry_slice_plotter import plot_slice_of_dagmc_geometry

plot = plot_slice_of_dagmc_geometry(
    dagmc_file_or_trimesh_object='dagmc.h5m',
    plane_origin=[0, 0, 200],
    plane_normal=[0, 0, 1],
)

plot.show()

dagmc slice plot

Create a plot of a slice through the geometry perpendicular to the Y axis, with a rotation of 45 degrees and with default settings elsewhere. Also saves the plot with a high resolution (DPI)

from dagmc_geometry_slice_plotter import plot_slice_of_dagmc_geometry

plot = plot_slice_of_dagmc_geometry(
    dagmc_file_or_trimesh_object='dagmc.h5m',
    plane_normal=[0, 1, 0],
    rotate_plot=45,
)

plot.savefig('my_plot3.png', dpi=600)

dagmc slice plot

Saves a png image of a plot of a slice through the geometry perpendicular to the X axis and with default settings elsewhere.

from dagmc_geometry_slice_plotter import plot_slice_of_dagmc_geometry

plot_slice_of_dagmc_geometry(
    dagmc_file_or_trimesh_object='dagmc.h5m',
    plane_normal = [1, 0, 0],
    rotate_plot=270,
    output_filename='my_plot4.png'
)

dagmc slice plot

Related packages

This package is used by the regular_mesh_plotter Python package to combine slice plots with regular mesh tally results and produce images like below.

paramak plot openmc regular mesh tally

paramak plot openmc regular mesh tally

Comments
  • Some funky PyQT errors?

    Some funky PyQT errors?

    Pip installed and got the following error;

    ~/.local/lib/python3.10/site-packages/IPython/external/qt_loaders.py in load_qt(api_options)
    370         return result
    371     else:
--> 372         raise ImportError("""
    373     Could not load requested Qt binding. Please ensure that
    374     PyQt4 >= 4.7, PyQt5, PySide >= 1.0.3 or PySide2 is available,

ImportError: 
    Could not load requested Qt binding. Please ensure that
    PyQt4 >= 4.7, PyQt5, PySide >= 1.0.3 or PySide2 is available,
    and only one is imported per session.

    Currently-imported Qt library:                              'pyqt5'
    PyQt4 available (requires QtCore, QtGui, QtSvg):            False
    PyQt5 available (requires QtCore, QtGui, QtSvg, QtWidgets): False
    PySide >= 1.0.3 installed:                                  False
    PySide2 installed:                                          True
    Tried to load:

    But, I do have pyqt5 & PySide2 installed

    opened by makeclean 1
  • added single function that works for file or object

    added single function that works for file or object

    Adds a function called plot_slice_of_dagmc_geometry that can accept either a dagmc file name or a trimesh object and then produce a plot.

    This provides a single entry function for users

    opened by shimwell 1
  • adopted latest py packaging approach

    adopted latest py packaging approach

    A while back I updated this package from a setup.py to use a setup.cfg and a pyproject.toml.

    It is now possible to do everything in the pyproject.toml so this PR updates the packages

    opened by shimwell 0
  • remove internal plotting methods

    remove internal plotting methods

    returning the mplt object and then using the mplt savefig() method offers more flexibility then the built in function offers.

    We can remove the internal function and reduce the code base a bit while maintaining the same functionalilty

    opened by shimwell 0
  • adding ability to make animation

    adding ability to make animation

    It would be handy if the slicer can make an animation

    Perhaps it could accept a tuple for some of these inputs of plane_origin, plane_normal, rotate_plot and then make an animation that sweeps between the inputs.

    A nice tutorial on mpl animations can be found here https://brushingupscience.com/2016/06/21/matplotlib-animations-the-easy-way/

    opened by shimwell 0
  • setuptools_scm is required in setup.cfg

    setuptools_scm is required in setup.cfg

    I might have done something incorrect with the setup.cfg / pyprogject.toml as it appears necessary to add setuptools_scm to the setup.cfg file.

    Without this package the CI fails https://github.com/fusion-energy/dagmc_geometry_slice_plotter/runs/5336107961?check_suite_focus=true

    With the package the CI passes https://github.com/fusion-energy/dagmc_geometry_slice_plotter/runs/5336124187?check_suite_focus=true

    I tested the removal of this package in this PR https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/14

    I'm just not sure why it setuptools_scm is needed as this is not the case for other packages I've translated to setup.cfg

    opened by shimwell 0
Releases(0.2.1)

  • 0.2.1(Dec 13, 2022)

    What's Changed

    • added axis labels by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/28

    Full Changelog: https://github.com/fusion-energy/dagmc_geometry_slice_plotter/compare/0.2.0...0.2.1

    Source code(tar.gz)
    Source code(zip)

  • 0.2.0(Dec 2, 2022)

    What's Changed

    • removed unused script by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/25
    • moved to src project layout by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/26
    • refactoring to allow axis aligned plots by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/27

    Full Changelog: https://github.com/fusion-energy/dagmc_geometry_slice_plotter/compare/0.1.3...0.2.0

    Source code(tar.gz)
    Source code(zip)

  • 0.1.3(Sep 29, 2022)

    What's Changed

    • removed packages that are installed by pyproject by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/22
    • added build back by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/23
    • added missing run cmd by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/24

    Full Changelog: https://github.com/fusion-energy/dagmc_geometry_slice_plotter/compare/0.1.2...0.1.3

    Source code(tar.gz)
    Source code(zip)

  • 0.1.2(Sep 29, 2022)

    What's Changed

    • adopted latest py packaging approach by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/20
    • updating package production by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/21

    Full Changelog: https://github.com/fusion-energy/dagmc_geometry_slice_plotter/compare/0.1.1...0.1.2

    Source code(tar.gz)
    Source code(zip)

  • 0.1.1(Mar 7, 2022)

    What's Changed

    • fixed typo in package name by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/19

    Full Changelog: https://github.com/fusion-energy/dagmc_geometry_slice_plotter/compare/0.1.0...0.1.1

    Source code(tar.gz)
    Source code(zip)

  • 0.1.0(Feb 25, 2022)

    What's Changed

    • updated to setup.cfg by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/13
    • Added more python versions to the testing by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/14
    • removed output filename option by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/18

    Full Changelog: https://github.com/fusion-energy/dagmc_geometry_slice_plotter/compare/v0.0.5...0.1.0

    Source code(tar.gz)
    Source code(zip)
Owner
Fusion Energy
A collection of software projects related to fusion energy
Fusion Energy
GitHub Repository
GitHub English Top Charts

Help you discover excellent English projects and get rid of the interference of other spoken language.

kon9chunkit 529 Jan 02, 2023
A streamlit component for bi-directional communication with bokeh plots.

Streamlit Bokeh Events A streamlit component for bi-directional communication with bokeh plots. Its just a workaround till streamlit team releases sup

Ashish Shukla 123 Dec 25, 2022
Matplotlib tutorial for beginner

matplotlib is probably the single most used Python package for 2D-graphics. It provides both a very quick way to visualize data from Python and publication-quality figures in many formats. We are goi

Nicolas P. Rougier 2.6k Dec 28, 2022
Scientific Visualization: Python + Matplotlib

An open access book on scientific visualization using python and matplotlib

Nicolas P. Rougier 8.6k Dec 31, 2022
A Jupyter - Three.js bridge

pythreejs A Python / ThreeJS bridge utilizing the Jupyter widget infrastructure. Getting Started Installation Using pip: pip install pythreejs And the

Jupyter Widgets 844 Dec 27, 2022
A gui application to visualize various sorting algorithms using pure python.

Sorting Algorithm Visualizer A gui application to visualize various sorting algorithms using pure python. Language : Python 3 Libraries required Tkint

Rajarshi Banerjee 19 Nov 30, 2022
Compute and visualise incidence (reworking of the original incidence package)

incidence2 incidence2 is an R package that implements functions and classes to compute, handle and visualise incidence from linelist data. It refocuss

15 Nov 22, 2022
Material for dataviz course at university of Bordeaux

Material for dataviz course at university of Bordeaux

Nicolas P. Rougier 50 Jul 17, 2022
Certificate generating and sending system written in Python.

Certificate Generator & Sender How to use git clone https://github.com/saadhaxxan/Certificate-Generator-Sender.git cd Certificate-Generator-Sender Add

Saad Hassan 11 Dec 01, 2022
🐍PyNode Next allows you to easily create beautiful graph visualisations and animations

PyNode Next A complete rewrite of PyNode for the modern era. Up to five times faster than the original PyNode. PyNode Next allows you to easily create

ehne 3 Feb 12, 2022
A simple python script using Numpy and Matplotlib library to plot a Mohr's Circle when given a two-dimensional state of stress.

Mohr's Circle Calculator This is a really small personal project done for Department of Civil Engineering, Delhi Technological University (formerly, D

Agyeya Mishra 0 Jul 17, 2021
TensorDebugger (TDB) is a visual debugger for deep learning. It extends TensorFlow with breakpoints + real-time visualization of the data flowing through the computational graph

TensorDebugger (TDB) is a visual debugger for deep learning. It extends TensorFlow (Google's Deep Learning framework) with breakpoints + real-time visualization of the data flowing through the comput

Eric Jang 1.4k Dec 15, 2022
A tool to plot and execute Rossmos's Formula, that helps to catch serial criminals using mathematics

Rossmo Plotter A tool to plot and execute Rossmos's Formula using python, that helps to catch serial criminals using mathematics Author: Amlan Saha Ku

Amlan Saha Kundu 3 Aug 29, 2022
Graphical display tools, to help students debug their class implementations in the Carcassonne family of projects

carcassonne_tools Graphical display tools, to help students debug their class implementations in the Carcassonne family of projects NOTE NOTE NOTE The

1 Nov 08, 2021
HW 02 for CS40 - matplotlib practice

HW 02 for CS40 - matplotlib practice project instructions https://github.com/mikeizbicki/cmc-csci040/tree/2021fall/hw_02 Drake Lyric Analysis Bar Char

13 Oct 27, 2021
VDLdraw - Batch plot the log files exported from VisualDL using Matplotlib

VDLdraw Batch plot the log files exported from VisualDL using Matplotlib. At pre

Yizhou Chen 5 Sep 26, 2022
OpenStats is a library built on top of streamlit that extracts data from the Github API and shows the main KPIs

Open Stats Discover and share the KPIs of your OpenSource project. OpenStats is a library built on top of streamlit that extracts data from the Github

Pere Miquel Brull 4 Apr 03, 2022
metedraw is a project mainly for data visualization projects of Atmospheric Science, Marine Science, Environmental Science or other majors

It is mainly for data visualization projects of Atmospheric Science, Marine Science, Environmental Science or other majors.

Nephele 11 Jul 05, 2022
Machine learning beginner to Kaggle competitor in 30 days. Non-coders welcome. The program starts Monday, August 2, and lasts four weeks. It's designed for people who want to learn machine learning.

30-Days-of-ML-Kaggle 🔥 About the Hands On Program 💻 Machine learning beginner → Kaggle competitor in 30 days. Non-coders welcome The program starts

Roja Achary 145 Jan 01, 2023
A workshop on data visualization in Python with notebooks and exercises for following along.

Beyond the Basics: Data Visualization in Python The human brain excels at finding patterns in visual representations, which is why data visualizations

Stefanie Molin 162 Dec 05, 2022