Produce an 'amino acid table' file from a vcf, including depth and alt frequency info.
This script uses pysam to parse .vcf files. pysam is available on both pypi and bioconda.
usage: aa_table_with_af.py [-h] [-s SAMPLE_ID] vcf
positional arguments:
vcf
optional arguments:
-h, --help show this help message and exit
-s SAMPLE_ID, --sample_id SAMPLE_ID
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