Doing bayesian data analysis - Python/PyMC3 versions of the programs described in Doing bayesian data analysis by John K. Kruschke

Overview

Doing_bayesian_data_analysis

Gitter

This repository contains the Python version of the R programs described in the great book Doing bayesian data analysis (first edition) by John K. Kruschke (AKA the puppy book).

All the code is adapted from the Kruschke's book, except hpd.py that is taken (without modifications) from the PyMC project.

The name of the programs are the same used in the book, except they begin with a number indicating the chapter. All programs are written in Python and instead of BUGS/JAGS the PyMC3 module is used.

Thanks to Brian Naughton the code is also available as an IPython notebook

Second edition

If you are interested on the PyMC3 code for the second edition of Doing bayesian data analysis, please check this Repository.

Owner
Osvaldo Martin
Osvaldo Martin
Mathics is a general-purpose computer algebra system (CAS). It is an open-source alternative to Mathematica

Mathics is a general-purpose computer algebra system (CAS). It is an open-source alternative to Mathematica. It is free both as in "free beer" and as in "freedom".

Mathics 535 Jan 04, 2023
OPEM (Open Source PEM Fuel Cell Simulation Tool)

Table of contents What is PEM? Overview Installation Usage Executable Library Telegram Bot Try OPEM in Your Browser! MATLAB Issues & Bug Reports Contr

ECSIM 133 Jan 04, 2023
SCICO is a Python package for solving the inverse problems that arise in scientific imaging applications.

Scientific Computational Imaging COde (SCICO) SCICO is a Python package for solving the inverse problems that arise in scientific imaging applications

Los Alamos National Laboratory 37 Dec 21, 2022
3D visualization of scientific data in Python

Mayavi: 3D visualization of scientific data in Python Mayavi docs: http://docs.enthought.com/mayavi/mayavi/ TVTK docs: http://docs.enthought.com/mayav

Enthought, Inc. 1.1k Jan 06, 2023
Animation engine for explanatory math videos

Manim is an engine for precise programatic animations, designed for creating explanatory math videos. Note, there are two versions of manim. This repo

Grant Sanderson 48.9k Jan 03, 2023
Efficient Python Tricks and Tools for Data Scientists

Why efficient Python? Because using Python more efficiently will make your code more readable and run more efficiently.

Khuyen Tran 944 Dec 28, 2022
Veusz scientific plotting application

Veusz 3.3.1 Veusz is a scientific plotting package. It is designed to produce publication-ready PDF or SVG output. Graphs are built-up by combining pl

Veusz 613 Dec 16, 2022
An interactive explorer for single-cell transcriptomics data

an interactive explorer for single-cell transcriptomics data cellxgene (pronounced "cell-by-gene") is an interactive data explorer for single-cell tra

Chan Zuckerberg Initiative 424 Dec 15, 2022
A mathematica expression evaluator with PokemonTypes

A simple mathematical expression evaluator that uses Pokemon types to replace symbols.

Arnav Jindal 2 Nov 14, 2021
Kedro is an open-source Python framework for creating reproducible, maintainable and modular data science code

A Python framework for creating reproducible, maintainable and modular data science code.

QuantumBlack Labs 7.9k Jan 01, 2023
Wikidata scholarly profiles

Scholia is a python package and webapp for interaction with scholarly information in Wikidata. Webapp As a webapp, it currently runs from Wikimedia To

Finn Årup Nielsen 180 Dec 28, 2022
PennyLane is a cross-platform Python library for differentiable programming of quantum computers.

PennyLane is a cross-platform Python library for differentiable programming of quantum computers. Train a quantum computer the same way as a neural network.

PennyLaneAI 1.6k Jan 04, 2023
Book on Julia for Data Science

Book on Julia for Data Science

Julia Data Science 349 Dec 25, 2022
🍊 :bar_chart: :bulb: Orange: Interactive data analysis

Orange Data Mining Orange is a data mining and visualization toolbox for novice and expert alike. To explore data with Orange, one requires no program

Bioinformatics Laboratory 3.9k Jan 05, 2023
Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Aesara

PyMC3 is a Python package for Bayesian statistical modeling and Probabilistic Machine Learning focusing on advanced Markov chain Monte Carlo (MCMC) an

PyMC 7.2k Dec 30, 2022
Incubator for useful bioinformatics code, primarily in Python and R

Collection of useful code related to biological analysis. Much of this is discussed with examples at Blue collar bioinformatics. All code, images and

Brad Chapman 560 Dec 24, 2022
CS 506 - Computational Tools for Data Science

CS 506 - Computational Tools for Data Science Code, slides, and notes for Boston University CS506 Fall 2021 The Final Project Repository can be found

Lance Galletti 14 Mar 23, 2022
AnuGA for the simulation of the shallow water equation

ANUGA Contents ANUGA What is ANUGA? Installation Documentation and Help Mailing Lists Web sites Latest source code Bug reports Developer information L

Geoscience Australia 147 Dec 14, 2022
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis. You write a high level configuration file specifying your in

Blue Collar Bioinformatics 915 Dec 29, 2022
Discontinuous Galerkin finite element method (DGFEM) for Maxwell Equations

DGFEM Maxwell Equations Discontinuous Galerkin finite element method (DGFEM) for Maxwell Equations. Work in progress. Currently, the 1D Maxwell equati

Rafael de la Fuente 9 Aug 16, 2022