Automated machine learning: Review of the state-of-the-art and opportunities for healthcare

Last update: Dec 23, 2022

Overview

AutoML in Healthcare Review

Automated machine learning: Review of the state-of-the-art and opportunities for healthcare

Selected highlights from the 2020 AutoML Review [https://doi.org/10.1016/j.artmed.2020.101822] that reviewed over 2,160 works related to the field of automated machine learning.

The curated list of automated feature engineering tools for Automated Machine Learning

Full details in https://www.sciencedirect.com/science/article/pii/S0933365719310437?via%3Dihub#tbl0005

Method	Work	Feature Engineering Technique	Used by how many works
Deep Feature Synthesis	LINK	Expand-Reduce	151
Explore Kit	LINK	Expand-Reduce	53
One Button Machine	LINK	Expand-Reduce	32
AutoLearn	LINK	Expand-Reduce	16
GP Feature Construction	LINK	Genetic Programming	68
Cognito	LINK	Hierarchical Greedy Search	38
RLFE	LINK	Reinforcement Learning	21
LFE	LINK	Meta-Learning	34

Automated machine learning pipeline optimizers

Full details in https://www.sciencedirect.com/science/article/pii/S0933365719310437?via%3Dihub#tbl0010

Method	Work	Optimization Algorithm	Data Pre-Processing	Feature Engineering	Model Selection	Hyperparameter Optimization	Ensemble Learning	Meta-Learning	Used by how many works
Auto-Weka	LINK	Bayesian Optimization (SMAC)	✔️		✔️	✔️			703
Auto-Sklearn	LINK	Joint Bayesian Optimization and Bandit Search (BOHB)	✔️		✔️	✔️	✔️	✔️	542
TPOT	LINK	Evolutionary Algorithm	✔️	✔️	✔️	✔️			84
TuPAQ	LINK	Bandit Search			✔️	✔️			94
ATM	LINK	Joint Bayesian Optimization and Bandit Search		✔️		✔️		✔️	29
Automatic Frankensteining	LINK	Bayesian Optimization			✔️	✔️	✔️		12
ML-Plan	LINK	Hierarchical Task Networks (HTN)	✔️		✔️	✔️			24
Autostacker	LINK	Evolutionary Algorithm			✔️	✔️	✔️		18
AlphaD3M	LINK	Reinforcement Learning/Monte Carlo Tree Search	✔️		✔️	✔️			8
Collaborative Filtering	LINK	Probabilistic Matrix Factorization	✔️		✔️	✔️		✔️	29

Neural Architecture Search algorithms, based on performance on the CIFAR-10 dataset

Full details in https://www.sciencedirect.com/science/article/pii/S0933365719310437?via%3Dihub#tbl0015

NAS Algorithm	Work	Search Space	Search Strategy	Performance Estimation Strategy	Number of Parameters	Search Time (GPU-days)	Test Error (%)
Large-scale Evolution	LINK	Feed-Forward Networks	Evolutionary Algorithm	Naive Training and Validation	5.4M	2600	5.4
EAS	LINK	Feed-Forward Networks	Reinforcement Learning and Network Morphism	Short Training and Validation	23.4M	10	4.23
Hierarchical Evolution	LINK	Cell Motifs	Evolutionary Algorithm	Training and Validation on proposed CNN Cell	15.7M	300	3.75
NAS v3	LINK	Multi-branched Networks	Reinforcement Learning	Naive Training and Validation	37.4M	22400	3.65
PNAS	LINK	Cell Motifs	Sequential Model-Based Optimization (SMBO)	Performance Prediction	3.2M	225	3.41
ENAS	LINK	Cell Motifs	Reinforcement Learning	One Shot	4.6M	0.45	2.89
ResNet + Regularization	LINK	HUMAN BASELINE	HUMAN BASELINE	HUMAN BASELINE	26.2M	-	2.86
DARTS	LINK	Cell Motifs	Gradient-Based Optimization	Training and Validation on proposed CNN Cell	3.4M	4	2.83
NASNet-A	LINK	Cell Motifs	Reinforcement Learning	Naive Training and Validation	3.3M	2000	2.65
EENA	LINK	Cell Motifs	Evolutionary Algorithm	Performance Prediction	8.5M	0.65	2.56
Path-Level EAS	LINK	Cell Motifs	Reinforcement Learning	Short Training and Validation	14.3M	200	2.30
NAO	LINK	Cell Motifs	Gradient-Based Optimization	Performance Prediction	128M	200	2.11

Automated machine learning: Review of the state-of-the-art and opportunities for healthcare

Related tags

Overview

AutoML in Healthcare Review

The curated list of automated feature engineering tools for Automated Machine Learning

Automated machine learning pipeline optimizers

Neural Architecture Search algorithms, based on performance on the CIFAR-10 dataset

Owner

A game theoretic approach to explain the output of any machine learning model.

Predicting diabetes over a five year period using logistic regression and the Pima First-Nation dataset

Machine Learning toolbox for Humans

Dive into Machine Learning

FLAML is a lightweight Python library that finds accurate machine learning models automatically, efficiently and economically

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A linear equation solver using gaussian elimination. Implemented for fun and learning/teaching.

Conducted ANOVA and Logistic regression analysis using matplot library to visualize the result.

A single Python file with some tools for visualizing machine learning in the terminal.

Microsoft contributing libraries, tools, recipes, sample codes and workshop contents for machine learning & deep learning.

Required for a machine learning pipeline data preprocessing and variable engineering script needs to be prepared

Combines MLflow with a database (PostgreSQL) and a reverse proxy (NGINX) into a multi-container Docker application

A simple python program that draws a tree for incrementing values using the Collatz Conjecture.

Combines Bayesian analyses from many datasets.

This is the material used in my free Persian course: Machine Learning with Python

slim-python is a package to learn customized scoring systems for decision-making problems.

Module for statistical learning, with a particular emphasis on time-dependent modelling

Distributed scikit-learn meta-estimators in PySpark

LightGBM + Optuna: no brainer

A library to generate synthetic time series data by easy-to-use factors and generator